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Calcium in PDB 4fdm: Crystallization and 3D Structure Elucidation of Thermostable L2 Lipase From Thermophilic Locally Isolated Bacillus Sp. L2.

Enzymatic activity of Crystallization and 3D Structure Elucidation of Thermostable L2 Lipase From Thermophilic Locally Isolated Bacillus Sp. L2.

All present enzymatic activity of Crystallization and 3D Structure Elucidation of Thermostable L2 Lipase From Thermophilic Locally Isolated Bacillus Sp. L2.:
3.1.1.3;

Protein crystallography data

The structure of Crystallization and 3D Structure Elucidation of Thermostable L2 Lipase From Thermophilic Locally Isolated Bacillus Sp. L2., PDB code: 4fdm was solved by R.N.Z.R.A.Rahman, F.M.Shariff, A.B.Salleh, M.B.Basri, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.93 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 71.977, 81.784, 83.374, 90.00, 90.00, 90.00
R / Rfree (%) 16.8 / 18.9

Other elements in 4fdm:

The structure of Crystallization and 3D Structure Elucidation of Thermostable L2 Lipase From Thermophilic Locally Isolated Bacillus Sp. L2. also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystallization and 3D Structure Elucidation of Thermostable L2 Lipase From Thermophilic Locally Isolated Bacillus Sp. L2. (pdb code 4fdm). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystallization and 3D Structure Elucidation of Thermostable L2 Lipase From Thermophilic Locally Isolated Bacillus Sp. L2., PDB code: 4fdm:

Calcium binding site 1 out of 1 in 4fdm

Go back to Calcium Binding Sites List in 4fdm
Calcium binding site 1 out of 1 in the Crystallization and 3D Structure Elucidation of Thermostable L2 Lipase From Thermophilic Locally Isolated Bacillus Sp. L2.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystallization and 3D Structure Elucidation of Thermostable L2 Lipase From Thermophilic Locally Isolated Bacillus Sp. L2. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca402

b:30.0
occ:1.00
 O A:GLY286 2.3 9.1 1.0
OE2 A:GLU360 2.3 10.6 1.0
O A:PRO366 2.4 8.6 1.0
O A:HOH617 2.4 25.7 1.0
OD2 A:ASP365 2.4 13.8 1.0
O A:HOH628 2.6 21.6 1.0
CD A:GLU360 3.4 8.8 1.0
C A:GLY286 3.4 9.4 1.0
C A:PRO366 3.6 8.1 1.0
CG A:ASP365 3.6 11.1 1.0
CG A:GLU360 3.6 5.7 1.0
CA A:GLY286 4.1 9.0 1.0
NH2 A:ARG271 4.3 11.0 1.0
CB A:ASN367 4.4 8.7 1.0
N A:ASN367 4.4 8.1 1.0
OD1 A:ASP365 4.4 13.0 1.0
N A:PRO366 4.4 7.8 1.0
CA A:ASN367 4.5 8.6 1.0
CB A:ASP365 4.5 8.9 1.0
N A:MET287 4.5 8.2 1.0
N A:ASN288 4.5 8.9 1.0
C A:MET287 4.5 7.8 1.0
OE1 A:GLU360 4.5 7.9 1.0
CA A:PRO366 4.6 7.3 1.0
O A:HOH739 4.6 28.7 1.0
C A:ASP365 4.7 8.2 1.0
CA A:MET287 4.7 8.3 1.0
CG A:PRO366 4.7 8.1 1.0
CD A:PRO366 4.8 9.8 1.0
O A:ASP365 4.9 7.9 1.0
O A:MET287 4.9 7.9 1.0

Reference:

R.N.Abd Rahman, F.M.Shariff, M.Basri, A.B.Salleh. 3D Structure Elucidation of Thermostable L2 Lipase From Thermophilic Bacillus Sp. L2. Int.J.Mol.Sci. V. 13 9207 2012.
ISSN: ISSN 1422-0067
PubMed: 22942761
DOI: 10.3390/IJMS13079207
Page generated: Tue Jul 8 19:59:24 2025

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