Calcium in PDB 4fl5: Crystal Structure of Human 14-3-3 Sigma in Complex with A Tau-Protein Peptide Surrounding PS214
Protein crystallography data
The structure of Crystal Structure of Human 14-3-3 Sigma in Complex with A Tau-Protein Peptide Surrounding PS214, PDB code: 4fl5
was solved by
B.Schumacher,
C.Ottmann,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
19.64 /
1.90
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
62.690,
70.080,
128.130,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
15.6 /
21.2
|
Other elements in 4fl5:
The structure of Crystal Structure of Human 14-3-3 Sigma in Complex with A Tau-Protein Peptide Surrounding PS214 also contains other interesting chemical elements:
Calcium Binding Sites:
The binding sites of Calcium atom in the Crystal Structure of Human 14-3-3 Sigma in Complex with A Tau-Protein Peptide Surrounding PS214
(pdb code 4fl5). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the
Crystal Structure of Human 14-3-3 Sigma in Complex with A Tau-Protein Peptide Surrounding PS214, PDB code: 4fl5:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
Calcium binding site 1 out
of 6 in 4fl5
Go back to
Calcium Binding Sites List in 4fl5
Calcium binding site 1 out
of 6 in the Crystal Structure of Human 14-3-3 Sigma in Complex with A Tau-Protein Peptide Surrounding PS214
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of Human 14-3-3 Sigma in Complex with A Tau-Protein Peptide Surrounding PS214 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca305
b:34.6
occ:1.00
|
O
|
A:HOH664
|
2.3
|
41.0
|
1.0
|
O
|
A:HOH624
|
2.3
|
31.6
|
1.0
|
O
|
A:HOH630
|
2.4
|
22.6
|
1.0
|
O
|
A:HOH498
|
2.5
|
26.8
|
1.0
|
O
|
A:HOH547
|
2.5
|
37.1
|
1.0
|
O
|
A:HOH476
|
2.5
|
22.7
|
1.0
|
O
|
A:HOH420
|
4.4
|
16.0
|
1.0
|
OD2
|
A:ASP215
|
4.5
|
19.6
|
1.0
|
CB
|
A:ASP211
|
4.6
|
14.1
|
1.0
|
OD1
|
A:ASP215
|
4.7
|
17.4
|
1.0
|
OD2
|
A:ASP211
|
4.8
|
26.0
|
1.0
|
CG
|
A:ASP211
|
5.0
|
22.4
|
1.0
|
|
Calcium binding site 2 out
of 6 in 4fl5
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Calcium Binding Sites List in 4fl5
Calcium binding site 2 out
of 6 in the Crystal Structure of Human 14-3-3 Sigma in Complex with A Tau-Protein Peptide Surrounding PS214
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of Human 14-3-3 Sigma in Complex with A Tau-Protein Peptide Surrounding PS214 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca306
b:20.4
occ:0.50
|
O
|
A:HOH432
|
2.2
|
32.9
|
1.0
|
OE1
|
A:GLU2
|
2.5
|
23.1
|
1.0
|
O
|
A:HOH426
|
2.7
|
17.4
|
1.0
|
CD
|
A:GLU2
|
3.4
|
22.0
|
1.0
|
OE2
|
A:GLU2
|
3.7
|
23.1
|
1.0
|
O
|
A:HOH410
|
4.5
|
11.5
|
1.0
|
O
|
A:HOH463
|
4.5
|
19.1
|
1.0
|
O
|
A:HOH617
|
4.5
|
24.0
|
1.0
|
CG
|
A:GLU2
|
4.7
|
16.9
|
1.0
|
CA
|
A:GLU2
|
4.8
|
12.3
|
1.0
|
|
Calcium binding site 3 out
of 6 in 4fl5
Go back to
Calcium Binding Sites List in 4fl5
Calcium binding site 3 out
of 6 in the Crystal Structure of Human 14-3-3 Sigma in Complex with A Tau-Protein Peptide Surrounding PS214
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of Human 14-3-3 Sigma in Complex with A Tau-Protein Peptide Surrounding PS214 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca307
b:42.8
occ:1.00
|
O
|
A:GLU161
|
2.4
|
14.7
|
1.0
|
O
|
A:HOH414
|
2.5
|
31.0
|
1.0
|
O
|
A:HOH613
|
2.6
|
44.2
|
1.0
|
O
|
A:HOH568
|
2.7
|
28.1
|
1.0
|
O
|
A:HOH588
|
2.8
|
34.4
|
1.0
|
O
|
A:HOH579
|
2.8
|
37.6
|
1.0
|
C
|
A:GLU161
|
3.5
|
15.0
|
1.0
|
CA
|
A:MET162
|
4.4
|
12.7
|
1.0
|
N
|
A:MET162
|
4.4
|
13.9
|
1.0
|
CA
|
A:GLU161
|
4.4
|
15.1
|
0.3
|
CA
|
A:GLU161
|
4.4
|
15.3
|
0.5
|
CA
|
A:GLU161
|
4.4
|
15.2
|
0.2
|
OE2
|
A:GLU115
|
4.6
|
35.0
|
1.0
|
OE1
|
A:GLU161
|
4.6
|
17.8
|
0.2
|
CB
|
A:GLU161
|
4.8
|
14.2
|
0.3
|
CB
|
A:GLU161
|
4.8
|
14.3
|
0.5
|
CB
|
A:GLU161
|
4.8
|
14.8
|
0.2
|
O
|
A:HOH612
|
4.9
|
49.7
|
1.0
|
CD
|
A:PRO163
|
4.9
|
13.2
|
1.0
|
O
|
A:HOH592
|
4.9
|
32.7
|
1.0
|
|
Calcium binding site 4 out
of 6 in 4fl5
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Calcium Binding Sites List in 4fl5
Calcium binding site 4 out
of 6 in the Crystal Structure of Human 14-3-3 Sigma in Complex with A Tau-Protein Peptide Surrounding PS214
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Crystal Structure of Human 14-3-3 Sigma in Complex with A Tau-Protein Peptide Surrounding PS214 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca308
b:18.3
occ:0.50
|
O
|
A:GLU110
|
2.2
|
8.8
|
0.3
|
OE1
|
A:GLU35
|
2.3
|
31.8
|
0.7
|
O
|
A:HOH591
|
2.3
|
43.2
|
1.0
|
OE2
|
A:GLU35
|
2.6
|
19.8
|
0.3
|
OE2
|
A:GLU35
|
2.6
|
28.8
|
0.7
|
O
|
A:HOH500
|
2.7
|
42.0
|
1.0
|
CD
|
A:GLU35
|
2.8
|
28.0
|
0.7
|
C
|
A:GLU110
|
3.5
|
8.5
|
0.3
|
O
|
A:HOH669
|
3.5
|
39.8
|
1.0
|
CD
|
A:GLU35
|
3.6
|
17.3
|
0.3
|
N
|
A:GLY112
|
3.9
|
9.3
|
0.3
|
CG
|
A:GLU35
|
4.0
|
15.2
|
0.3
|
CG
|
A:GLU35
|
4.3
|
21.4
|
0.7
|
N
|
A:GLY112
|
4.3
|
32.1
|
0.7
|
CA
|
A:GLU110
|
4.4
|
9.0
|
0.3
|
CB
|
A:ALA111
|
4.4
|
34.2
|
0.7
|
N
|
A:ALA111
|
4.4
|
6.3
|
0.3
|
CA
|
A:ALA111
|
4.4
|
6.3
|
0.3
|
CB
|
A:GLU110
|
4.5
|
9.1
|
0.3
|
O
|
A:HOH665
|
4.5
|
32.8
|
1.0
|
OE1
|
A:GLU110
|
4.6
|
17.9
|
0.3
|
C
|
A:ALA111
|
4.6
|
7.0
|
0.3
|
O
|
A:HOH666
|
4.7
|
33.2
|
1.0
|
O
|
A:HOH470
|
4.7
|
20.4
|
1.0
|
OE1
|
A:GLU35
|
4.7
|
15.0
|
0.3
|
CA
|
A:GLY112
|
4.8
|
27.3
|
0.7
|
CA
|
A:GLY112
|
4.8
|
12.9
|
0.3
|
|
Calcium binding site 5 out
of 6 in 4fl5
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Calcium Binding Sites List in 4fl5
Calcium binding site 5 out
of 6 in the Crystal Structure of Human 14-3-3 Sigma in Complex with A Tau-Protein Peptide Surrounding PS214
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Crystal Structure of Human 14-3-3 Sigma in Complex with A Tau-Protein Peptide Surrounding PS214 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca309
b:21.9
occ:1.00
|
O
|
A:HOH553
|
3.0
|
23.4
|
1.0
|
O
|
A:HOH589
|
3.1
|
25.2
|
1.0
|
CA
|
A:TYR84
|
3.7
|
13.8
|
1.0
|
CD
|
A:LYS87
|
3.7
|
24.1
|
1.0
|
CD
|
A:LYS87
|
3.7
|
22.6
|
0.0
|
O
|
A:GLU83
|
3.9
|
11.5
|
1.0
|
N
|
A:TYR84
|
4.0
|
13.0
|
1.0
|
C
|
A:GLU83
|
4.0
|
13.0
|
1.0
|
CD1
|
A:TYR84
|
4.1
|
12.7
|
1.0
|
CB
|
A:LYS87
|
4.1
|
12.7
|
0.0
|
CB
|
A:LYS87
|
4.1
|
13.5
|
1.0
|
CB
|
A:TYR84
|
4.1
|
12.0
|
1.0
|
CB
|
A:GLU83
|
4.3
|
14.5
|
1.0
|
CG
|
A:TYR84
|
4.6
|
15.3
|
1.0
|
CG
|
A:LYS87
|
4.6
|
20.3
|
0.0
|
O
|
A:HOH521
|
4.6
|
18.7
|
1.0
|
CG
|
A:LYS87
|
4.6
|
20.5
|
1.0
|
CE
|
A:LYS87
|
4.7
|
22.6
|
1.0
|
CE
|
A:LYS87
|
4.8
|
21.7
|
0.0
|
CA
|
A:GLU83
|
4.8
|
13.8
|
1.0
|
NZ
|
A:LYS87
|
4.9
|
29.5
|
0.0
|
|
Calcium binding site 6 out
of 6 in 4fl5
Go back to
Calcium Binding Sites List in 4fl5
Calcium binding site 6 out
of 6 in the Crystal Structure of Human 14-3-3 Sigma in Complex with A Tau-Protein Peptide Surrounding PS214
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Crystal Structure of Human 14-3-3 Sigma in Complex with A Tau-Protein Peptide Surrounding PS214 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca303
b:24.8
occ:1.00
|
O
|
B:HOH632
|
2.9
|
31.0
|
1.0
|
O
|
B:HOH454
|
3.1
|
25.6
|
1.0
|
CA
|
B:TYR84
|
3.8
|
12.3
|
1.0
|
O
|
B:GLU83
|
3.9
|
11.2
|
1.0
|
CD
|
B:LYS87
|
3.9
|
22.0
|
1.0
|
N
|
B:TYR84
|
4.0
|
12.0
|
1.0
|
C
|
B:GLU83
|
4.0
|
11.3
|
1.0
|
CB
|
B:LYS87
|
4.1
|
13.4
|
0.3
|
CB
|
B:LYS87
|
4.1
|
13.3
|
0.7
|
CB
|
B:TYR84
|
4.2
|
12.1
|
1.0
|
CD1
|
B:TYR84
|
4.2
|
11.7
|
1.0
|
CB
|
B:GLU83
|
4.2
|
10.3
|
1.0
|
O
|
B:HOH598
|
4.3
|
17.6
|
1.0
|
CG
|
B:LYS87
|
4.5
|
17.0
|
0.3
|
CG
|
B:LYS87
|
4.5
|
17.7
|
0.7
|
CG
|
B:TYR84
|
4.7
|
11.9
|
1.0
|
CA
|
B:GLU83
|
4.8
|
13.0
|
1.0
|
O
|
B:HOH597
|
4.8
|
51.7
|
1.0
|
|
Reference:
Y.Joo,
B.Schumacher,
M.Bartel,
C.Smet-Nocca,
A.Jang,
H.S.Choi,
N.L.Jeon,
H.S.Kim,
I.Landrieu,
Y.H.Suh,
C.Ottmann.
14-3-3 Binding to Tau Causes Tubulin Instability and Impairs Axon Development: Structural Basis and Functional Consequences of 14-3-3/Tau Interaction To Be Published.
Page generated: Sun Jul 14 00:25:35 2024
|