Calcium in PDB 4fou: Structure of the Pilz-Fimx(Eal Domain)-C-Di-Gmp Complex Responsible For the Regulation of Bacterial Type IV Pilus Biogenesis

The structure of Structure of the Pilz-Fimx(Eal Domain)-C-Di-Gmp Complex Responsible For the Regulation of Bacterial Type IV Pilus Biogenesis, PDB code: 4fou was solved by C.S.Farah, C.R.Guzzo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.50 / 2.10
Space group	P 65
Cell size a, b, c (Å), α, β, γ (°)	126.787, 126.787, 107.317, 90.00, 90.00, 120.00
R / Rfree (%)	18.6 / 23.8

The binding sites of Calcium atom in the Structure of the Pilz-Fimx(Eal Domain)-C-Di-Gmp Complex Responsible For the Regulation of Bacterial Type IV Pilus Biogenesis (pdb code 4fou). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Structure of the Pilz-Fimx(Eal Domain)-C-Di-Gmp Complex Responsible For the Regulation of Bacterial Type IV Pilus Biogenesis, PDB code: 4fou:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Structure of the Pilz-Fimx(Eal Domain)-C-Di-Gmp Complex Responsible For the Regulation of Bacterial Type IV Pilus Biogenesis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of the Pilz-Fimx(Eal Domain)-C-Di-Gmp Complex Responsible For the Regulation of Bacterial Type IV Pilus Biogenesis within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca702 b:58.8 occ:1.00 O A:ASP502 2.3 38.9 1.0 OD2 A:ASP502 2.4 40.0 0.5 O A:HOH939 2.5 51.1 1.0 OE2 A:GLU506 2.5 39.6 0.9 O A:HOH810 2.6 48.7 1.0 O A:HOH971 2.7 73.0 1.0 OE1 A:GLU506 2.8 38.9 0.9 CD A:GLU506 3.0 37.5 0.9 CG A:ASP502 3.0 40.8 0.5 C A:ASP502 3.5 38.9 1.0 OD1 A:ASP502 3.6 40.4 0.5 CB A:ASP502 3.9 40.2 0.5 OG1 A:THR505 4.0 37.8 1.0 CB A:ASP502 4.0 40.5 0.5 CA A:ASP502 4.3 39.5 0.5 CA A:ASP502 4.4 39.5 0.5 N A:LEU503 4.5 36.5 1.0 CG A:GLU506 4.5 36.1 1.0 CA A:LEU503 4.6 34.8 1.0 O A:HOH940 4.8 32.5 1.0

Calcium binding site 2 out of 3 in the Structure of the Pilz-Fimx(Eal Domain)-C-Di-Gmp Complex Responsible For the Regulation of Bacterial Type IV Pilus Biogenesis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of the Pilz-Fimx(Eal Domain)-C-Di-Gmp Complex Responsible For the Regulation of Bacterial Type IV Pilus Biogenesis within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca703 b:74.6 occ:1.00 O A:HOH948 2.0 58.9 1.0 O B:HOH876 2.2 69.6 1.0 O B:HOH878 2.2 56.1 1.0 OD1 A:ASP435 2.4 67.4 1.0 OE2 B:GLU440 2.6 61.0 1.0 O B:HOH877 2.8 69.5 1.0 CG A:ASP435 3.5 63.6 1.0 CD B:GLU440 3.7 58.4 1.0 OE1 A:GLU438 3.8 74.8 1.0 CG B:GLU440 4.0 54.6 1.0 OE2 B:GLU439 4.1 66.7 0.8 O B:HOH879 4.2 71.0 1.0 OD2 A:ASP435 4.2 66.9 1.0 CB A:ASP435 4.3 61.3 1.0 CA A:ASP435 4.4 60.8 1.0 CD A:GLU438 4.6 72.1 1.0 O B:ARG436 4.7 56.4 1.0 OE1 B:GLU440 4.8 61.6 1.0 OE2 B:GLU443 4.8 47.2 0.8 CD B:GLU439 4.9 62.8 0.8 O A:ASP435 4.9 60.9 1.0 OE2 A:GLU438 4.9 75.0 1.0 O C:HOH216 5.0 47.8 1.0

Calcium binding site 3 out of 3 in the Structure of the Pilz-Fimx(Eal Domain)-C-Di-Gmp Complex Responsible For the Regulation of Bacterial Type IV Pilus Biogenesis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of the Pilz-Fimx(Eal Domain)-C-Di-Gmp Complex Responsible For the Regulation of Bacterial Type IV Pilus Biogenesis within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca705 b:59.4 occ:1.00 O C:HOH226 2.3 55.9 1.0 OE1 B:GLU443 2.3 49.9 0.8 O B:HOH880 2.4 58.6 1.0 O A:HOH938 2.5 54.1 1.0 O C:HOH225 2.5 47.9 1.0 OE1 B:GLU440 2.6 61.6 1.0 O B:HOH879 2.6 71.0 1.0 CD B:GLU440 3.3 58.4 1.0 OE2 B:GLU440 3.3 61.0 1.0 CD B:GLU443 3.6 51.3 0.8 OE2 C:GLU101 3.9 56.9 1.0 CB B:GLU443 4.3 49.8 1.0 OE1 C:GLU101 4.3 51.1 1.0 CD C:GLU101 4.3 52.1 1.0 OE2 A:GLU438 4.4 75.0 1.0 OE2 B:GLU443 4.4 47.2 0.8 CG B:GLU443 4.5 49.2 0.8 CG B:GLU440 4.6 54.6 1.0 OE1 A:GLU438 4.7 74.8 1.0 O C:PRO27 4.7 47.5 1.0 CA B:GLU440 4.8 53.3 1.0 CB B:GLU440 4.9 53.3 1.0 O B:GLU440 4.9 51.3 1.0 NH2 C:ARG97 5.0 55.5 1.0 CD A:GLU438 5.0 72.1 1.0

C.R.Guzzo, G.Dunger, R.K.Salinas, C.S.Farah. Structure of the Pilz-Fimxeal-C-Di-Gmp Complex Responsible For the Regulation of Bacterial Type IV Pilus Biogenesis. J.Mol.Biol. V. 425 2174 2013.
ISSN: ISSN 0022-2836
PubMed: 23507310
DOI: 10.1016/J.JMB.2013.03.021