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Calcium in PDB 4fts: Crystal Structure of the N363T Mutant of the Flock House Virus Capsid

Enzymatic activity of Crystal Structure of the N363T Mutant of the Flock House Virus Capsid

All present enzymatic activity of Crystal Structure of the N363T Mutant of the Flock House Virus Capsid:
3.4.23.44;

Protein crystallography data

The structure of Crystal Structure of the N363T Mutant of the Flock House Virus Capsid, PDB code: 4fts was solved by J.A.Speir, Z.Chen, V.S.Reddy, J.E.Johnson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 3.20
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 326.040, 326.040, 770.150, 90.00, 90.00, 120.00
R / Rfree (%) 25.9 / n/a

Other elements in 4fts:

The structure of Crystal Structure of the N363T Mutant of the Flock House Virus Capsid also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of the N363T Mutant of the Flock House Virus Capsid (pdb code 4fts). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Crystal Structure of the N363T Mutant of the Flock House Virus Capsid, PDB code: 4fts:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in 4fts

Go back to Calcium Binding Sites List in 4fts
Calcium binding site 1 out of 4 in the Crystal Structure of the N363T Mutant of the Flock House Virus Capsid


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the N363T Mutant of the Flock House Virus Capsid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca501

b:58.6
occ:1.00
 OD1 B:ASP161 2.6 96.2 1.0
O A:GLY273 2.6 72.1 1.0
O A:HOH659 2.8 32.3 1.0
OD2 A:ASP221 2.9 73.7 1.0
C A:GLY273 3.3 72.1 1.0
O A:HOH605 3.5 38.6 1.0
OD1 A:ASP221 3.5 73.7 1.0
CG A:ASP221 3.6 73.7 1.0
CG B:ASP161 3.6 96.2 1.0
O B:THR157 3.7 71.5 1.0
OG B:SER160 3.8 65.8 1.0
CA A:GLY273 3.8 72.1 1.0
OE1 B:GLU257 3.9 65.9 1.0
OD2 B:ASP161 4.1 96.2 1.0
N A:GLN274 4.3 67.5 1.0
CA B:SER158 4.5 78.0 1.0
C B:SER160 4.6 63.8 1.0
N B:ASP161 4.6 61.8 1.0
O B:SER160 4.6 63.8 1.0
CD A:PRO275 4.7 80.2 1.0
CA A:GLN274 4.7 67.5 1.0
CA B:ASP161 4.7 61.8 1.0
C B:THR157 4.8 71.5 1.0
CB B:ASP161 4.8 96.2 1.0

Calcium binding site 2 out of 4 in 4fts

Go back to Calcium Binding Sites List in 4fts
Calcium binding site 2 out of 4 in the Crystal Structure of the N363T Mutant of the Flock House Virus Capsid


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of the N363T Mutant of the Flock House Virus Capsid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca502

b:0.8
occ:1.00
 OD1 C:ASP249 2.6 92.7 1.0
OD1 A:ASP249 2.7 86.3 1.0
OD2 B:ASP249 2.7 91.0 1.0
OD1 B:ASP249 2.9 91.0 1.0
OE2 A:GLU251 3.2 0.4 1.0
CG B:ASP249 3.2 91.0 1.0
CG C:ASP249 3.4 92.7 1.0
CG A:ASP249 3.5 86.3 1.0
OD2 C:ASP249 3.5 92.7 1.0
OD2 A:ASP249 3.5 86.3 1.0
CD A:GLU251 3.6 0.4 1.0
CD C:GLU251 3.6 0.5 1.0
CG C:GLU251 3.7 0.5 1.0
OE1 A:GLU251 3.8 0.4 1.0
OE1 C:GLU251 3.9 0.5 1.0
OE2 C:GLU251 3.9 0.5 1.0
CD B:GLU251 4.0 0.9 1.0
OE2 B:GLU251 4.1 0.9 1.0
CG B:GLU251 4.1 0.9 1.0
CB C:GLU251 4.3 0.5 1.0
OE1 B:GLU251 4.4 0.9 1.0
CB B:GLU251 4.4 0.9 1.0
CG A:GLU251 4.6 0.4 1.0
CB B:ASP249 4.7 91.0 1.0
CB C:ASP249 4.9 92.7 1.0
CB A:GLU251 4.9 0.4 1.0
CB A:ASP249 5.0 86.3 1.0

Calcium binding site 3 out of 4 in 4fts

Go back to Calcium Binding Sites List in 4fts
Calcium binding site 3 out of 4 in the Crystal Structure of the N363T Mutant of the Flock House Virus Capsid


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of the N363T Mutant of the Flock House Virus Capsid within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca501

b:58.7
occ:1.00
 O B:GLY273 2.7 80.3 1.0
OD1 C:ASP161 2.8 84.7 1.0
O B:HOH678 2.8 24.2 1.0
OD2 B:ASP221 3.1 70.8 1.0
C B:GLY273 3.4 80.3 1.0
OD1 B:ASP221 3.4 70.8 1.0
OE2 C:GLU257 3.5 75.8 1.0
OG C:SER160 3.5 72.8 1.0
CG C:ASP161 3.5 84.7 1.0
O C:THR157 3.6 76.6 1.0
CG B:ASP221 3.6 70.8 1.0
CA B:GLY273 3.7 80.3 1.0
OD2 C:ASP161 3.8 84.7 1.0
CA C:SER158 4.3 72.8 1.0
N C:ASP161 4.4 60.5 1.0
N B:GLN274 4.4 74.9 1.0
C C:SER160 4.5 66.9 1.0
CA C:ASP161 4.5 60.5 1.0
C C:THR157 4.5 76.6 1.0
CB C:ASP161 4.6 84.7 1.0
O C:SER160 4.7 66.9 1.0
CB C:SER160 4.7 72.8 1.0
CD C:GLU257 4.7 75.8 1.0
N C:SER158 4.9 72.8 1.0
C C:SER158 4.9 72.8 1.0
CA B:GLN274 4.9 74.9 1.0
N C:SER160 5.0 66.9 1.0
CA C:SER160 5.0 66.9 1.0

Calcium binding site 4 out of 4 in 4fts

Go back to Calcium Binding Sites List in 4fts
Calcium binding site 4 out of 4 in the Crystal Structure of the N363T Mutant of the Flock House Virus Capsid


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of the N363T Mutant of the Flock House Virus Capsid within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca501

b:61.4
occ:1.00
 O C:GLY273 2.1 76.9 1.0
OD1 A:ASP161 3.0 91.5 1.0
OD2 C:ASP221 3.1 87.1 1.0
OD1 C:ASP221 3.2 87.1 1.0
OD2 A:ASP161 3.2 91.5 1.0
C C:GLY273 3.3 76.9 1.0
CG A:ASP161 3.4 91.5 1.0
CG C:ASP221 3.5 87.1 1.0
O A:THR157 3.8 62.7 1.0
CA C:GLY273 4.0 76.9 1.0
OG A:SER160 4.0 68.0 1.0
OE2 A:GLU257 4.2 71.7 1.0
N C:GLN274 4.3 73.2 1.0
CD C:PRO275 4.5 82.2 1.0
CA C:GLN274 4.6 73.2 1.0
CB A:ASP161 4.6 91.5 1.0
CA A:ASP161 4.7 66.0 1.0
C C:GLN274 4.7 73.2 1.0
N A:ASP161 4.8 66.0 1.0
O A:SER160 4.8 65.9 1.0
C A:SER160 4.8 65.9 1.0
N C:PRO275 4.9 64.8 1.0
C A:THR157 4.9 62.7 1.0

Reference:

J.A.Speir, Z.Chen, V.S.Reddy, J.E.Johnson. Structural Study of Virus Assembly Intermediates Reveals Maturation Event Sequence and A Staging Position For Externalized Lytic Peptides To Be Published 2012.
Page generated: Sun Jul 14 06:56:29 2024

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