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Calcium in PDB 4fvk: Structural and Functional Characterization of Neuraminidase-Like Molecule N10 Derived From Bat Influenza A Virus

Enzymatic activity of Structural and Functional Characterization of Neuraminidase-Like Molecule N10 Derived From Bat Influenza A Virus

All present enzymatic activity of Structural and Functional Characterization of Neuraminidase-Like Molecule N10 Derived From Bat Influenza A Virus:
3.2.1.18;

Protein crystallography data

The structure of Structural and Functional Characterization of Neuraminidase-Like Molecule N10 Derived From Bat Influenza A Virus, PDB code: 4fvk was solved by Q.Li, X.M.Sun, Z.X.Li, Y.Liu, C.J.Vavricka, J.X.Qi, G.F.Gao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.03 / 2.20
Space group P 4 21 2
Cell size a, b, c (Å), α, β, γ (°) 122.496, 122.496, 110.504, 90.00, 90.00, 90.00
R / Rfree (%) 20.7 / 24.6

Other elements in 4fvk:

The structure of Structural and Functional Characterization of Neuraminidase-Like Molecule N10 Derived From Bat Influenza A Virus also contains other interesting chemical elements:

Zinc (Zn) 6 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Structural and Functional Characterization of Neuraminidase-Like Molecule N10 Derived From Bat Influenza A Virus (pdb code 4fvk). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structural and Functional Characterization of Neuraminidase-Like Molecule N10 Derived From Bat Influenza A Virus, PDB code: 4fvk:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 4fvk

Go back to Calcium Binding Sites List in 4fvk
Calcium binding site 1 out of 2 in the Structural and Functional Characterization of Neuraminidase-Like Molecule N10 Derived From Bat Influenza A Virus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structural and Functional Characterization of Neuraminidase-Like Molecule N10 Derived From Bat Influenza A Virus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca501

b:32.6
occ:1.00
 O A:ASN293 2.3 27.3 1.0
OD2 A:ASP324 2.3 26.5 1.0
O A:GLY347 2.4 29.0 1.0
O A:ASP297 2.4 32.1 1.0
O A:HOH607 2.4 40.5 1.0
O A:GLY345 2.6 31.8 1.0
CG A:ASP324 3.5 28.7 1.0
C A:ASN293 3.5 26.5 1.0
C A:GLY345 3.5 35.5 1.0
C A:ASP297 3.5 34.1 1.0
C A:GLY347 3.6 31.1 1.0
O A:HOH626 3.7 40.5 1.0
CA A:GLY348 4.1 28.3 1.0
CA A:GLY345 4.1 34.5 1.0
CB A:ASP324 4.1 26.9 1.0
CA A:ALA298 4.2 30.9 1.0
N A:GLY348 4.3 30.2 1.0
N A:ALA298 4.3 30.9 1.0
CA A:LEU294 4.3 26.7 1.0
N A:LEU294 4.4 25.0 1.0
N A:ASP297 4.4 34.7 1.0
OD1 A:ASP324 4.4 27.6 1.0
C A:GLU346 4.4 43.7 1.0
CA A:ASN293 4.4 25.1 1.0
N A:GLY347 4.5 32.8 1.0
N A:GLU346 4.5 44.0 1.0
CA A:ASP297 4.6 31.7 1.0
CB A:ASN293 4.6 26.4 1.0
O A:GLU346 4.6 43.1 1.0
N A:ASN293 4.6 24.3 1.0
CA A:GLY347 4.7 30.9 1.0
C A:LEU294 4.7 31.2 1.0
O A:LYS344 4.8 38.7 1.0
CA A:GLU346 4.9 43.4 1.0
O A:PRO326 4.9 31.8 1.0

Calcium binding site 2 out of 2 in 4fvk

Go back to Calcium Binding Sites List in 4fvk
Calcium binding site 2 out of 2 in the Structural and Functional Characterization of Neuraminidase-Like Molecule N10 Derived From Bat Influenza A Virus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structural and Functional Characterization of Neuraminidase-Like Molecule N10 Derived From Bat Influenza A Virus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca501

b:54.3
occ:1.00
 O B:ASN293 2.2 56.3 1.0
O B:HOH604 2.3 40.5 1.0
O B:GLY347 2.4 59.8 1.0
OD2 B:ASP324 2.4 60.0 1.0
O B:ASP297 2.5 67.1 1.0
O B:GLY345 2.8 59.5 1.0
CG B:ASP324 3.4 59.9 1.0
C B:ASN293 3.4 55.9 1.0
O B:HOH645 3.5 40.5 1.0
C B:GLY347 3.5 59.7 1.0
C B:ASP297 3.6 70.0 1.0
C B:GLY345 3.7 62.5 1.0
CA B:GLY348 4.0 60.1 1.0
OD1 B:ASP324 4.1 55.1 1.0
CA B:ALA298 4.2 62.6 1.0
CA B:GLY345 4.2 63.0 1.0
N B:GLY348 4.2 63.0 1.0
N B:ALA298 4.2 64.8 1.0
CA B:LEU294 4.2 59.5 1.0
N B:LEU294 4.3 59.2 1.0
CB B:ASP324 4.3 58.3 1.0
O B:GLU346 4.4 78.0 1.0
CA B:ASN293 4.4 56.3 1.0
C B:GLU346 4.4 81.1 1.0
N B:ASP297 4.5 71.6 1.0
N B:GLY347 4.6 64.2 1.0
C B:LEU294 4.6 63.2 1.0
CB B:ASN293 4.6 58.4 1.0
N B:ASN293 4.6 54.8 1.0
CA B:ASP297 4.6 70.5 1.0
CA B:GLY347 4.7 60.7 1.0
N B:GLU346 4.7 85.8 1.0
O B:LYS344 4.7 78.9 1.0
O B:PRO326 4.8 59.5 1.0
O B:LEU294 4.9 63.7 1.0
N B:TRP295 5.0 67.7 1.0

Reference:

Q.Li, X.M.Sun, Z.X.Li, Y.Liu, C.J.Vavricka, J.X.Qi, G.F.Gao. Structural and Functional Characterization of Neuraminidase-Like Molecule N10 Derived From Bat Influenza A Virus Proc.Natl.Acad.Sci.Usa V. 109 18897 2012.
ISSN: ISSN 0027-8424
PubMed: 23012237
DOI: 10.1073/PNAS.1211037109
Page generated: Sun Jul 14 06:56:55 2024

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