Atomistry » Calcium » PDB 4fl5-4gdi » 4fvk
Atomistry »
  Calcium »
    PDB 4fl5-4gdi »
      4fvk »

Calcium in PDB 4fvk: Structural and Functional Characterization of Neuraminidase-Like Molecule N10 Derived From Bat Influenza A Virus

Enzymatic activity of Structural and Functional Characterization of Neuraminidase-Like Molecule N10 Derived From Bat Influenza A Virus

All present enzymatic activity of Structural and Functional Characterization of Neuraminidase-Like Molecule N10 Derived From Bat Influenza A Virus:
3.2.1.18;

Protein crystallography data

The structure of Structural and Functional Characterization of Neuraminidase-Like Molecule N10 Derived From Bat Influenza A Virus, PDB code: 4fvk was solved by Q.Li, X.M.Sun, Z.X.Li, Y.Liu, C.J.Vavricka, J.X.Qi, G.F.Gao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.03 / 2.20
Space group P 4 21 2
Cell size a, b, c (Å), α, β, γ (°) 122.496, 122.496, 110.504, 90.00, 90.00, 90.00
R / Rfree (%) 20.7 / 24.6

Other elements in 4fvk:

The structure of Structural and Functional Characterization of Neuraminidase-Like Molecule N10 Derived From Bat Influenza A Virus also contains other interesting chemical elements:

Zinc (Zn) 6 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Structural and Functional Characterization of Neuraminidase-Like Molecule N10 Derived From Bat Influenza A Virus (pdb code 4fvk). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structural and Functional Characterization of Neuraminidase-Like Molecule N10 Derived From Bat Influenza A Virus, PDB code: 4fvk:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 4fvk

Go back to Calcium Binding Sites List in 4fvk
Calcium binding site 1 out of 2 in the Structural and Functional Characterization of Neuraminidase-Like Molecule N10 Derived From Bat Influenza A Virus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structural and Functional Characterization of Neuraminidase-Like Molecule N10 Derived From Bat Influenza A Virus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca501

b:32.6
occ:1.00
O A:ASN293 2.3 27.3 1.0
OD2 A:ASP324 2.3 26.5 1.0
O A:GLY347 2.4 29.0 1.0
O A:ASP297 2.4 32.1 1.0
O A:HOH607 2.4 40.5 1.0
O A:GLY345 2.6 31.8 1.0
CG A:ASP324 3.5 28.7 1.0
C A:ASN293 3.5 26.5 1.0
C A:GLY345 3.5 35.5 1.0
C A:ASP297 3.5 34.1 1.0
C A:GLY347 3.6 31.1 1.0
O A:HOH626 3.7 40.5 1.0
CA A:GLY348 4.1 28.3 1.0
CA A:GLY345 4.1 34.5 1.0
CB A:ASP324 4.1 26.9 1.0
CA A:ALA298 4.2 30.9 1.0
N A:GLY348 4.3 30.2 1.0
N A:ALA298 4.3 30.9 1.0
CA A:LEU294 4.3 26.7 1.0
N A:LEU294 4.4 25.0 1.0
N A:ASP297 4.4 34.7 1.0
OD1 A:ASP324 4.4 27.6 1.0
C A:GLU346 4.4 43.7 1.0
CA A:ASN293 4.4 25.1 1.0
N A:GLY347 4.5 32.8 1.0
N A:GLU346 4.5 44.0 1.0
CA A:ASP297 4.6 31.7 1.0
CB A:ASN293 4.6 26.4 1.0
O A:GLU346 4.6 43.1 1.0
N A:ASN293 4.6 24.3 1.0
CA A:GLY347 4.7 30.9 1.0
C A:LEU294 4.7 31.2 1.0
O A:LYS344 4.8 38.7 1.0
CA A:GLU346 4.9 43.4 1.0
O A:PRO326 4.9 31.8 1.0

Calcium binding site 2 out of 2 in 4fvk

Go back to Calcium Binding Sites List in 4fvk
Calcium binding site 2 out of 2 in the Structural and Functional Characterization of Neuraminidase-Like Molecule N10 Derived From Bat Influenza A Virus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structural and Functional Characterization of Neuraminidase-Like Molecule N10 Derived From Bat Influenza A Virus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca501

b:54.3
occ:1.00
O B:ASN293 2.2 56.3 1.0
O B:HOH604 2.3 40.5 1.0
O B:GLY347 2.4 59.8 1.0
OD2 B:ASP324 2.4 60.0 1.0
O B:ASP297 2.5 67.1 1.0
O B:GLY345 2.8 59.5 1.0
CG B:ASP324 3.4 59.9 1.0
C B:ASN293 3.4 55.9 1.0
O B:HOH645 3.5 40.5 1.0
C B:GLY347 3.5 59.7 1.0
C B:ASP297 3.6 70.0 1.0
C B:GLY345 3.7 62.5 1.0
CA B:GLY348 4.0 60.1 1.0
OD1 B:ASP324 4.1 55.1 1.0
CA B:ALA298 4.2 62.6 1.0
CA B:GLY345 4.2 63.0 1.0
N B:GLY348 4.2 63.0 1.0
N B:ALA298 4.2 64.8 1.0
CA B:LEU294 4.2 59.5 1.0
N B:LEU294 4.3 59.2 1.0
CB B:ASP324 4.3 58.3 1.0
O B:GLU346 4.4 78.0 1.0
CA B:ASN293 4.4 56.3 1.0
C B:GLU346 4.4 81.1 1.0
N B:ASP297 4.5 71.6 1.0
N B:GLY347 4.6 64.2 1.0
C B:LEU294 4.6 63.2 1.0
CB B:ASN293 4.6 58.4 1.0
N B:ASN293 4.6 54.8 1.0
CA B:ASP297 4.6 70.5 1.0
CA B:GLY347 4.7 60.7 1.0
N B:GLU346 4.7 85.8 1.0
O B:LYS344 4.7 78.9 1.0
O B:PRO326 4.8 59.5 1.0
O B:LEU294 4.9 63.7 1.0
N B:TRP295 5.0 67.7 1.0

Reference:

Q.Li, X.M.Sun, Z.X.Li, Y.Liu, C.J.Vavricka, J.X.Qi, G.F.Gao. Structural and Functional Characterization of Neuraminidase-Like Molecule N10 Derived From Bat Influenza A Virus Proc.Natl.Acad.Sci.Usa V. 109 18897 2012.
ISSN: ISSN 0027-8424
PubMed: 23012237
DOI: 10.1073/PNAS.1211037109
Page generated: Sat Dec 12 04:47:11 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy