Calcium in PDB 4gez: Structure of A Neuraminidase-Like Protein From A/Bat/Guatemala/164/2009
Protein crystallography data
The structure of Structure of A Neuraminidase-Like Protein From A/Bat/Guatemala/164/2009, PDB code: 4gez
was solved by
H.Yang,
P.J.Carney,
R.O.Donis,
J.Stevens,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
29.88 /
2.50
|
|
Space group
|
P 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
113.325,
113.331,
114.305,
81.47,
81.55,
67.72
|
|
R / Rfree (%)
|
21.8 /
26.2
|
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Calcium atom in the Structure of A Neuraminidase-Like Protein From A/Bat/Guatemala/164/2009
(pdb code 4gez). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 12 binding sites of Calcium where determined in the
Structure of A Neuraminidase-Like Protein From A/Bat/Guatemala/164/2009, PDB code: 4gez:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 12 in 4gez
Go back to
Calcium Binding Sites List in 4gez
Calcium binding site 1 out
of 12 in the Structure of A Neuraminidase-Like Protein From A/Bat/Guatemala/164/2009
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Structure of A Neuraminidase-Like Protein From A/Bat/Guatemala/164/2009 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca501
b:34.0
occ:1.00
|
O
|
A:ASN284
|
2.3
|
44.4
|
1.0
|
|
OD2
|
A:ASP314
|
2.4
|
35.2
|
1.0
|
|
O
|
A:GLY334
|
2.4
|
35.3
|
1.0
|
|
O
|
A:ASP288
|
2.4
|
42.8
|
1.0
|
|
O
|
A:GLY332
|
2.5
|
41.7
|
1.0
|
|
CG
|
A:ASP314
|
3.4
|
37.5
|
1.0
|
|
C
|
A:ASN284
|
3.5
|
35.5
|
1.0
|
|
C
|
A:GLY334
|
3.5
|
33.8
|
1.0
|
|
C
|
A:ASP288
|
3.5
|
36.0
|
1.0
|
|
C
|
A:GLY332
|
3.6
|
37.7
|
1.0
|
|
CA
|
A:GLY335
|
4.0
|
23.3
|
1.0
|
|
O
|
A:HOH617
|
4.0
|
19.1
|
1.0
|
|
CA
|
A:GLY332
|
4.1
|
33.1
|
1.0
|
|
CA
|
A:ALA289
|
4.2
|
30.1
|
1.0
|
|
N
|
A:GLY335
|
4.2
|
28.6
|
1.0
|
|
OD1
|
A:ASP314
|
4.2
|
24.2
|
1.0
|
|
CB
|
A:ASP314
|
4.2
|
37.1
|
1.0
|
|
N
|
A:ALA289
|
4.3
|
35.8
|
1.0
|
|
N
|
A:LEU285
|
4.4
|
23.1
|
1.0
|
|
CA
|
A:LEU285
|
4.4
|
31.6
|
1.0
|
|
CA
|
A:ASN284
|
4.4
|
35.1
|
1.0
|
|
C
|
A:GLU333
|
4.5
|
31.6
|
1.0
|
|
N
|
A:GLY334
|
4.5
|
30.1
|
1.0
|
|
N
|
A:ASP288
|
4.5
|
33.0
|
1.0
|
|
CB
|
A:ASN284
|
4.6
|
35.6
|
1.0
|
|
O
|
A:LYS331
|
4.6
|
31.1
|
1.0
|
|
O
|
A:PRO316
|
4.6
|
46.6
|
1.0
|
|
O
|
A:GLU333
|
4.6
|
32.2
|
1.0
|
|
CA
|
A:ASP288
|
4.6
|
34.1
|
1.0
|
|
N
|
A:GLU333
|
4.6
|
39.0
|
1.0
|
|
CA
|
A:GLY334
|
4.6
|
35.5
|
1.0
|
|
N
|
A:ASN284
|
4.7
|
27.2
|
1.0
|
|
C
|
A:LEU285
|
4.8
|
36.6
|
1.0
|
|
CA
|
A:GLU333
|
5.0
|
35.7
|
1.0
|
|
N
|
A:TRP286
|
5.0
|
32.4
|
1.0
|
|
Calcium binding site 2 out
of 12 in 4gez
Go back to
Calcium Binding Sites List in 4gez
Calcium binding site 2 out
of 12 in the Structure of A Neuraminidase-Like Protein From A/Bat/Guatemala/164/2009
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Structure of A Neuraminidase-Like Protein From A/Bat/Guatemala/164/2009 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca501
b:42.2
occ:1.00
|
O
|
B:GLY334
|
2.3
|
30.6
|
1.0
|
|
O
|
B:ASP288
|
2.3
|
34.4
|
1.0
|
|
O
|
B:ASN284
|
2.4
|
34.5
|
1.0
|
|
OD2
|
B:ASP314
|
2.5
|
41.1
|
1.0
|
|
O
|
B:GLY332
|
2.5
|
42.1
|
1.0
|
|
O
|
B:HOH645
|
2.7
|
23.6
|
1.0
|
|
C
|
B:ASP288
|
3.5
|
39.1
|
1.0
|
|
C
|
B:GLY332
|
3.5
|
37.3
|
1.0
|
|
C
|
B:GLY334
|
3.5
|
32.0
|
1.0
|
|
CG
|
B:ASP314
|
3.5
|
38.0
|
1.0
|
|
C
|
B:ASN284
|
3.6
|
29.0
|
1.0
|
|
CA
|
B:ALA289
|
4.0
|
38.4
|
1.0
|
|
CA
|
B:GLY332
|
4.0
|
37.4
|
1.0
|
|
CA
|
B:GLY335
|
4.1
|
30.6
|
1.0
|
|
N
|
B:ALA289
|
4.1
|
39.2
|
1.0
|
|
CB
|
B:ASP314
|
4.2
|
35.3
|
1.0
|
|
N
|
B:GLY335
|
4.2
|
32.3
|
1.0
|
|
C
|
B:GLU333
|
4.3
|
47.3
|
1.0
|
|
N
|
B:GLY334
|
4.3
|
44.1
|
1.0
|
|
O
|
B:LYS331
|
4.3
|
49.8
|
1.0
|
|
OD1
|
B:ASP314
|
4.4
|
38.8
|
1.0
|
|
O
|
B:GLU333
|
4.4
|
50.1
|
1.0
|
|
O
|
B:PRO316
|
4.5
|
37.7
|
1.0
|
|
N
|
B:ASP288
|
4.5
|
42.8
|
1.0
|
|
CA
|
B:GLY334
|
4.5
|
34.3
|
1.0
|
|
N
|
B:GLU333
|
4.5
|
41.0
|
1.0
|
|
N
|
B:LEU285
|
4.5
|
19.9
|
1.0
|
|
CA
|
B:ASP288
|
4.6
|
42.3
|
1.0
|
|
CA
|
B:LEU285
|
4.6
|
22.8
|
1.0
|
|
CA
|
B:ASN284
|
4.6
|
27.6
|
1.0
|
|
CB
|
B:ASN284
|
4.7
|
28.3
|
1.0
|
|
N
|
B:ASN284
|
4.8
|
29.0
|
1.0
|
|
CA
|
B:GLU333
|
4.8
|
44.5
|
1.0
|
|
CB
|
B:ALA289
|
4.9
|
37.0
|
1.0
|
|
C
|
B:LEU285
|
4.9
|
35.0
|
1.0
|
|
C
|
B:ALA289
|
4.9
|
31.3
|
1.0
|
|
Calcium binding site 3 out
of 12 in 4gez
Go back to
Calcium Binding Sites List in 4gez
Calcium binding site 3 out
of 12 in the Structure of A Neuraminidase-Like Protein From A/Bat/Guatemala/164/2009
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Structure of A Neuraminidase-Like Protein From A/Bat/Guatemala/164/2009 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca501
b:37.6
occ:1.00
|
O
|
C:ASN284
|
2.3
|
22.0
|
1.0
|
|
O
|
C:HOH619
|
2.3
|
23.4
|
1.0
|
|
O
|
C:ASP288
|
2.4
|
30.1
|
1.0
|
|
OD2
|
C:ASP314
|
2.4
|
47.1
|
1.0
|
|
O
|
C:GLY334
|
2.5
|
31.0
|
1.0
|
|
O
|
C:GLY332
|
2.5
|
47.2
|
1.0
|
|
CG
|
C:ASP314
|
3.4
|
46.4
|
1.0
|
|
C
|
C:ASP288
|
3.5
|
37.8
|
1.0
|
|
C
|
C:ASN284
|
3.5
|
18.9
|
1.0
|
|
C
|
C:GLY332
|
3.6
|
45.5
|
1.0
|
|
C
|
C:GLY334
|
3.7
|
32.2
|
1.0
|
|
CA
|
C:ALA289
|
4.1
|
35.6
|
1.0
|
|
CA
|
C:GLY332
|
4.1
|
45.4
|
1.0
|
|
CA
|
C:GLY335
|
4.2
|
17.7
|
1.0
|
|
N
|
C:ALA289
|
4.2
|
38.0
|
1.0
|
|
OD1
|
C:ASP314
|
4.2
|
41.8
|
1.0
|
|
CB
|
C:ASP314
|
4.3
|
39.6
|
1.0
|
|
N
|
C:GLY335
|
4.4
|
22.8
|
1.0
|
|
N
|
C:LEU285
|
4.4
|
19.9
|
1.0
|
|
CA
|
C:LEU285
|
4.4
|
27.5
|
1.0
|
|
CA
|
C:ASN284
|
4.4
|
27.3
|
1.0
|
|
N
|
C:ASP288
|
4.5
|
37.8
|
1.0
|
|
CA
|
C:ASP288
|
4.6
|
36.8
|
1.0
|
|
CB
|
C:ASN284
|
4.6
|
30.4
|
1.0
|
|
N
|
C:ASN284
|
4.6
|
32.7
|
1.0
|
|
N
|
C:GLY334
|
4.6
|
24.1
|
1.0
|
|
C
|
C:GLU333
|
4.6
|
41.1
|
1.0
|
|
O
|
C:LYS331
|
4.7
|
39.8
|
1.0
|
|
N
|
C:GLU333
|
4.7
|
44.3
|
1.0
|
|
O
|
C:PRO316
|
4.7
|
25.0
|
1.0
|
|
O
|
C:GLU333
|
4.7
|
49.0
|
1.0
|
|
C
|
C:LEU285
|
4.8
|
32.7
|
1.0
|
|
CA
|
C:GLY334
|
4.8
|
24.0
|
1.0
|
|
N
|
C:TRP286
|
5.0
|
40.4
|
1.0
|
|
Calcium binding site 4 out
of 12 in 4gez
Go back to
Calcium Binding Sites List in 4gez
Calcium binding site 4 out
of 12 in the Structure of A Neuraminidase-Like Protein From A/Bat/Guatemala/164/2009
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Structure of A Neuraminidase-Like Protein From A/Bat/Guatemala/164/2009 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca501
b:33.9
occ:1.00
|
O
|
D:ASN284
|
2.3
|
31.5
|
1.0
|
|
O
|
D:ASP288
|
2.4
|
49.4
|
1.0
|
|
O
|
D:HOH618
|
2.4
|
22.8
|
1.0
|
|
OD2
|
D:ASP314
|
2.4
|
44.4
|
1.0
|
|
O
|
D:GLY334
|
2.5
|
26.4
|
1.0
|
|
O
|
D:GLY332
|
2.6
|
39.1
|
1.0
|
|
C
|
D:ASP288
|
3.5
|
42.2
|
1.0
|
|
CG
|
D:ASP314
|
3.5
|
41.5
|
1.0
|
|
C
|
D:ASN284
|
3.5
|
28.2
|
1.0
|
|
C
|
D:GLY332
|
3.6
|
37.8
|
1.0
|
|
C
|
D:GLY334
|
3.6
|
31.2
|
1.0
|
|
CA
|
D:GLY332
|
4.1
|
36.9
|
1.0
|
|
CA
|
D:GLY335
|
4.1
|
31.4
|
1.0
|
|
CA
|
D:ALA289
|
4.1
|
30.8
|
1.0
|
|
N
|
D:ALA289
|
4.2
|
34.0
|
1.0
|
|
CB
|
D:ASP314
|
4.2
|
39.6
|
1.0
|
|
N
|
D:GLY335
|
4.3
|
32.7
|
1.0
|
|
OD1
|
D:ASP314
|
4.3
|
37.9
|
1.0
|
|
CA
|
D:ASN284
|
4.4
|
30.0
|
1.0
|
|
N
|
D:ASP288
|
4.4
|
43.6
|
1.0
|
|
N
|
D:LEU285
|
4.5
|
29.1
|
1.0
|
|
CB
|
D:ASN284
|
4.5
|
36.4
|
1.0
|
|
O
|
D:LYS331
|
4.5
|
36.8
|
1.0
|
|
CA
|
D:LEU285
|
4.5
|
30.4
|
1.0
|
|
CA
|
D:ASP288
|
4.5
|
45.3
|
1.0
|
|
N
|
D:GLY334
|
4.5
|
40.4
|
1.0
|
|
C
|
D:GLU333
|
4.6
|
43.2
|
1.0
|
|
N
|
D:ASN284
|
4.6
|
34.6
|
1.0
|
|
N
|
D:GLU333
|
4.7
|
45.3
|
1.0
|
|
O
|
D:GLU333
|
4.7
|
39.9
|
1.0
|
|
CA
|
D:GLY334
|
4.7
|
31.6
|
1.0
|
|
O
|
D:PRO316
|
4.7
|
37.3
|
1.0
|
|
C
|
D:LEU285
|
4.9
|
31.4
|
1.0
|
|
Calcium binding site 5 out
of 12 in 4gez
Go back to
Calcium Binding Sites List in 4gez
Calcium binding site 5 out
of 12 in the Structure of A Neuraminidase-Like Protein From A/Bat/Guatemala/164/2009
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Structure of A Neuraminidase-Like Protein From A/Bat/Guatemala/164/2009 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca501
b:41.1
occ:1.00
|
O
|
E:ASN284
|
2.3
|
40.3
|
1.0
|
|
O
|
E:GLY334
|
2.4
|
46.3
|
1.0
|
|
OD2
|
E:ASP314
|
2.4
|
33.5
|
1.0
|
|
O
|
E:ASP288
|
2.4
|
43.8
|
1.0
|
|
O
|
E:GLY332
|
2.5
|
37.7
|
1.0
|
|
CG
|
E:ASP314
|
3.4
|
34.6
|
1.0
|
|
C
|
E:ASP288
|
3.5
|
34.0
|
1.0
|
|
C
|
E:GLY332
|
3.5
|
37.0
|
1.0
|
|
C
|
E:GLY334
|
3.5
|
43.2
|
1.0
|
|
C
|
E:ASN284
|
3.6
|
34.6
|
1.0
|
|
CA
|
E:ALA289
|
4.0
|
19.3
|
1.0
|
|
CA
|
E:GLY332
|
4.0
|
38.9
|
1.0
|
|
CA
|
E:GLY335
|
4.1
|
36.4
|
1.0
|
|
CB
|
E:ASP314
|
4.1
|
30.7
|
1.0
|
|
N
|
E:ALA289
|
4.1
|
29.3
|
1.0
|
|
OD1
|
E:ASP314
|
4.2
|
34.2
|
1.0
|
|
N
|
E:GLY335
|
4.2
|
38.9
|
1.0
|
|
O
|
E:HOH604
|
4.3
|
20.4
|
1.0
|
|
C
|
E:GLU333
|
4.3
|
48.6
|
1.0
|
|
N
|
E:GLY334
|
4.4
|
45.7
|
1.0
|
|
CA
|
E:LEU285
|
4.4
|
31.3
|
1.0
|
|
N
|
E:LEU285
|
4.4
|
29.6
|
1.0
|
|
O
|
E:LYS331
|
4.5
|
50.2
|
1.0
|
|
O
|
E:GLU333
|
4.5
|
49.4
|
1.0
|
|
N
|
E:GLU333
|
4.5
|
39.5
|
1.0
|
|
CA
|
E:ASN284
|
4.5
|
34.2
|
1.0
|
|
N
|
E:ASP288
|
4.5
|
30.7
|
1.0
|
|
CA
|
E:ASP288
|
4.6
|
28.9
|
1.0
|
|
CA
|
E:GLY334
|
4.6
|
43.4
|
1.0
|
|
O
|
E:PRO316
|
4.6
|
52.6
|
1.0
|
|
CB
|
E:ASN284
|
4.7
|
38.7
|
1.0
|
|
N
|
E:ASN284
|
4.7
|
34.1
|
1.0
|
|
C
|
E:LEU285
|
4.8
|
34.8
|
1.0
|
|
CA
|
E:GLU333
|
4.8
|
46.9
|
1.0
|
|
CB
|
E:ALA289
|
4.9
|
14.5
|
1.0
|
|
C
|
E:ALA289
|
5.0
|
28.5
|
1.0
|
|
Calcium binding site 6 out
of 12 in 4gez
Go back to
Calcium Binding Sites List in 4gez
Calcium binding site 6 out
of 12 in the Structure of A Neuraminidase-Like Protein From A/Bat/Guatemala/164/2009
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Structure of A Neuraminidase-Like Protein From A/Bat/Guatemala/164/2009 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Ca501
b:45.8
occ:1.00
|
O
|
F:ASN284
|
2.4
|
23.6
|
1.0
|
|
O
|
F:GLY334
|
2.4
|
33.8
|
1.0
|
|
OD2
|
F:ASP314
|
2.4
|
55.6
|
1.0
|
|
O
|
F:GLY332
|
2.4
|
50.6
|
1.0
|
|
O
|
F:HOH602
|
2.4
|
34.5
|
1.0
|
|
O
|
F:ASP288
|
2.5
|
48.2
|
1.0
|
|
C
|
F:GLY332
|
3.4
|
46.8
|
1.0
|
|
CG
|
F:ASP314
|
3.5
|
45.8
|
1.0
|
|
C
|
F:GLY334
|
3.5
|
31.8
|
1.0
|
|
C
|
F:ASP288
|
3.6
|
49.9
|
1.0
|
|
C
|
F:ASN284
|
3.6
|
30.5
|
1.0
|
|
CA
|
F:GLY332
|
3.9
|
42.2
|
1.0
|
|
CA
|
F:GLY335
|
4.1
|
22.5
|
1.0
|
|
O
|
F:HOH635
|
4.1
|
38.4
|
1.0
|
|
CB
|
F:ASP314
|
4.1
|
42.2
|
1.0
|
|
CA
|
F:ALA289
|
4.2
|
45.1
|
1.0
|
|
N
|
F:GLY335
|
4.3
|
21.3
|
1.0
|
|
N
|
F:ALA289
|
4.3
|
44.4
|
1.0
|
|
OD1
|
F:ASP314
|
4.4
|
40.9
|
1.0
|
|
N
|
F:GLY334
|
4.4
|
38.7
|
1.0
|
|
C
|
F:GLU333
|
4.4
|
49.7
|
1.0
|
|
O
|
F:LYS331
|
4.4
|
42.6
|
1.0
|
|
N
|
F:ASP288
|
4.5
|
41.5
|
1.0
|
|
N
|
F:LEU285
|
4.5
|
31.5
|
1.0
|
|
CA
|
F:LEU285
|
4.5
|
32.2
|
1.0
|
|
CA
|
F:ASN284
|
4.5
|
34.0
|
1.0
|
|
N
|
F:GLU333
|
4.5
|
50.0
|
1.0
|
|
O
|
F:PRO316
|
4.6
|
31.8
|
1.0
|
|
CA
|
F:ASP288
|
4.6
|
49.8
|
1.0
|
|
CA
|
F:GLY334
|
4.6
|
36.3
|
1.0
|
|
O
|
F:GLU333
|
4.6
|
58.1
|
1.0
|
|
CB
|
F:ASN284
|
4.6
|
28.6
|
1.0
|
|
N
|
F:ASN284
|
4.7
|
40.8
|
1.0
|
|
C
|
F:LEU285
|
4.8
|
40.2
|
1.0
|
|
CA
|
F:GLU333
|
4.9
|
49.9
|
1.0
|
|
N
|
F:TRP286
|
5.0
|
37.1
|
1.0
|
|
Calcium binding site 7 out
of 12 in 4gez
Go back to
Calcium Binding Sites List in 4gez
Calcium binding site 7 out
of 12 in the Structure of A Neuraminidase-Like Protein From A/Bat/Guatemala/164/2009
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Structure of A Neuraminidase-Like Protein From A/Bat/Guatemala/164/2009 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Ca501
b:28.4
occ:1.00
|
O
|
G:ASN284
|
2.3
|
26.1
|
1.0
|
|
O
|
G:GLY334
|
2.4
|
25.4
|
1.0
|
|
O
|
G:HOH612
|
2.4
|
25.5
|
1.0
|
|
O
|
G:ASP288
|
2.4
|
39.0
|
1.0
|
|
OD2
|
G:ASP314
|
2.6
|
50.0
|
1.0
|
|
O
|
G:GLY332
|
2.6
|
50.1
|
1.0
|
|
O
|
G:HOH625
|
3.4
|
35.6
|
1.0
|
|
C
|
G:GLY334
|
3.5
|
31.9
|
1.0
|
|
C
|
G:ASP288
|
3.5
|
45.6
|
1.0
|
|
CG
|
G:ASP314
|
3.6
|
51.8
|
1.0
|
|
C
|
G:ASN284
|
3.6
|
35.6
|
1.0
|
|
C
|
G:GLY332
|
3.6
|
46.9
|
1.0
|
|
CA
|
G:ALA289
|
4.0
|
47.6
|
1.0
|
|
CA
|
G:GLY335
|
4.0
|
28.4
|
1.0
|
|
N
|
G:ALA289
|
4.2
|
53.0
|
1.0
|
|
CB
|
G:ASP314
|
4.2
|
47.7
|
1.0
|
|
N
|
G:GLY335
|
4.2
|
35.7
|
1.0
|
|
CA
|
G:GLY332
|
4.2
|
44.6
|
1.0
|
|
N
|
G:GLY334
|
4.4
|
25.4
|
1.0
|
|
C
|
G:GLU333
|
4.5
|
50.9
|
1.0
|
|
N
|
G:LEU285
|
4.5
|
32.7
|
1.0
|
|
OD1
|
G:ASP314
|
4.5
|
47.0
|
1.0
|
|
CA
|
G:LEU285
|
4.5
|
42.6
|
1.0
|
|
CA
|
G:ASN284
|
4.5
|
40.9
|
1.0
|
|
O
|
G:LYS331
|
4.6
|
52.5
|
1.0
|
|
O
|
G:GLU333
|
4.6
|
49.4
|
1.0
|
|
CA
|
G:GLY334
|
4.6
|
24.5
|
1.0
|
|
O
|
G:PRO316
|
4.6
|
31.6
|
1.0
|
|
N
|
G:ASP288
|
4.6
|
51.3
|
1.0
|
|
CB
|
G:ASN284
|
4.6
|
47.2
|
1.0
|
|
CA
|
G:ASP288
|
4.7
|
49.8
|
1.0
|
|
N
|
G:ASN284
|
4.7
|
32.3
|
1.0
|
|
N
|
G:GLU333
|
4.7
|
51.7
|
1.0
|
|
CB
|
G:ALA289
|
4.9
|
49.8
|
1.0
|
|
C
|
G:LEU285
|
4.9
|
44.9
|
1.0
|
|
C
|
G:ALA289
|
4.9
|
45.0
|
1.0
|
|
CA
|
G:GLU333
|
5.0
|
54.9
|
1.0
|
|
Calcium binding site 8 out
of 12 in 4gez
Go back to
Calcium Binding Sites List in 4gez
Calcium binding site 8 out
of 12 in the Structure of A Neuraminidase-Like Protein From A/Bat/Guatemala/164/2009
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Structure of A Neuraminidase-Like Protein From A/Bat/Guatemala/164/2009 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Ca501
b:37.1
occ:1.00
|
O
|
H:ASP288
|
2.3
|
45.3
|
1.0
|
|
O
|
H:ASN284
|
2.4
|
31.8
|
1.0
|
|
O
|
H:GLY334
|
2.4
|
32.1
|
1.0
|
|
O
|
H:GLY332
|
2.5
|
49.1
|
1.0
|
|
OD2
|
H:ASP314
|
2.6
|
46.0
|
1.0
|
|
C
|
H:ASP288
|
3.4
|
44.7
|
1.0
|
|
C
|
H:GLY332
|
3.5
|
43.3
|
1.0
|
|
CG
|
H:ASP314
|
3.6
|
47.3
|
1.0
|
|
C
|
H:GLY334
|
3.6
|
30.2
|
1.0
|
|
C
|
H:ASN284
|
3.6
|
35.0
|
1.0
|
|
CA
|
H:ALA289
|
4.0
|
38.7
|
1.0
|
|
CA
|
H:GLY332
|
4.0
|
39.1
|
1.0
|
|
N
|
H:ALA289
|
4.1
|
39.6
|
1.0
|
|
CA
|
H:GLY335
|
4.1
|
44.7
|
1.0
|
|
CB
|
H:ASP314
|
4.2
|
46.3
|
1.0
|
|
N
|
H:GLY335
|
4.3
|
37.9
|
1.0
|
|
O
|
H:LYS331
|
4.4
|
46.9
|
1.0
|
|
OD1
|
H:ASP314
|
4.4
|
41.0
|
1.0
|
|
C
|
H:GLU333
|
4.4
|
41.9
|
1.0
|
|
N
|
H:GLY334
|
4.5
|
32.3
|
1.0
|
|
N
|
H:ASP288
|
4.5
|
48.4
|
1.0
|
|
CA
|
H:ASP288
|
4.5
|
46.6
|
1.0
|
|
N
|
H:LEU285
|
4.5
|
33.8
|
1.0
|
|
CA
|
H:ASN284
|
4.5
|
38.8
|
1.0
|
|
CA
|
H:LEU285
|
4.6
|
40.5
|
1.0
|
|
O
|
H:GLU333
|
4.6
|
45.0
|
1.0
|
|
N
|
H:GLU333
|
4.6
|
45.0
|
1.0
|
|
O
|
H:PRO316
|
4.6
|
58.2
|
1.0
|
|
CA
|
H:GLY334
|
4.6
|
23.4
|
1.0
|
|
CB
|
H:ASN284
|
4.7
|
44.4
|
1.0
|
|
N
|
H:ASN284
|
4.7
|
40.3
|
1.0
|
|
CB
|
H:ALA289
|
4.8
|
27.7
|
1.0
|
|
CA
|
H:GLU333
|
4.9
|
45.4
|
1.0
|
|
C
|
H:LEU285
|
4.9
|
38.6
|
1.0
|
|
C
|
H:ALA289
|
4.9
|
42.4
|
1.0
|
|
Calcium binding site 9 out
of 12 in 4gez
Go back to
Calcium Binding Sites List in 4gez
Calcium binding site 9 out
of 12 in the Structure of A Neuraminidase-Like Protein From A/Bat/Guatemala/164/2009
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Structure of A Neuraminidase-Like Protein From A/Bat/Guatemala/164/2009 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Ca501
b:51.9
occ:1.00
|
O
|
I:ASP288
|
2.3
|
47.0
|
1.0
|
|
O
|
I:GLY334
|
2.3
|
51.5
|
1.0
|
|
O
|
I:ASN284
|
2.4
|
54.9
|
1.0
|
|
OD2
|
I:ASP314
|
2.5
|
57.2
|
1.0
|
|
O
|
I:GLY332
|
2.5
|
59.0
|
1.0
|
|
C
|
I:ASP288
|
3.4
|
52.5
|
1.0
|
|
C
|
I:GLY334
|
3.5
|
51.4
|
1.0
|
|
CG
|
I:ASP314
|
3.5
|
60.8
|
1.0
|
|
C
|
I:GLY332
|
3.5
|
57.0
|
1.0
|
|
C
|
I:ASN284
|
3.7
|
44.3
|
1.0
|
|
CA
|
I:GLY335
|
3.9
|
56.0
|
1.0
|
|
CA
|
I:GLY332
|
4.0
|
58.2
|
1.0
|
|
CA
|
I:ALA289
|
4.0
|
57.1
|
1.0
|
|
CB
|
I:ASP314
|
4.1
|
61.4
|
1.0
|
|
N
|
I:ALA289
|
4.1
|
57.1
|
1.0
|
|
N
|
I:GLY335
|
4.1
|
54.2
|
1.0
|
|
OD1
|
I:ASP314
|
4.4
|
62.7
|
1.0
|
|
C
|
I:GLU333
|
4.4
|
52.3
|
1.0
|
|
N
|
I:GLY334
|
4.4
|
51.7
|
1.0
|
|
O
|
I:LYS331
|
4.4
|
71.4
|
1.0
|
|
N
|
I:ASP288
|
4.4
|
56.1
|
1.0
|
|
CA
|
I:ASP288
|
4.5
|
60.7
|
1.0
|
|
O
|
I:GLU333
|
4.5
|
47.2
|
1.0
|
|
CA
|
I:LEU285
|
4.5
|
43.6
|
1.0
|
|
N
|
I:LEU285
|
4.5
|
43.7
|
1.0
|
|
O
|
I:PRO316
|
4.6
|
54.0
|
1.0
|
|
CA
|
I:GLY334
|
4.6
|
45.4
|
1.0
|
|
N
|
I:GLU333
|
4.6
|
58.5
|
1.0
|
|
CA
|
I:ASN284
|
4.6
|
44.4
|
1.0
|
|
CB
|
I:ASN284
|
4.8
|
44.5
|
1.0
|
|
N
|
I:ASN284
|
4.8
|
60.0
|
1.0
|
|
C
|
I:LEU285
|
4.9
|
43.2
|
1.0
|
|
CA
|
I:GLU333
|
4.9
|
56.6
|
1.0
|
|
C
|
I:ALA289
|
5.0
|
60.0
|
1.0
|
|
CB
|
I:ALA289
|
5.0
|
53.1
|
1.0
|
|
Calcium binding site 10 out
of 12 in 4gez
Go back to
Calcium Binding Sites List in 4gez
Calcium binding site 10 out
of 12 in the Structure of A Neuraminidase-Like Protein From A/Bat/Guatemala/164/2009
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Structure of A Neuraminidase-Like Protein From A/Bat/Guatemala/164/2009 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Ca501
b:65.5
occ:1.00
|
O
|
J:ASN284
|
2.3
|
71.1
|
1.0
|
|
O
|
J:GLY332
|
2.4
|
69.0
|
1.0
|
|
OD2
|
J:ASP314
|
2.4
|
70.2
|
1.0
|
|
O
|
J:ASP288
|
2.5
|
60.5
|
1.0
|
|
O
|
J:GLY334
|
2.6
|
66.7
|
1.0
|
|
C
|
J:GLY332
|
3.5
|
72.3
|
1.0
|
|
CG
|
J:ASP314
|
3.5
|
71.3
|
1.0
|
|
C
|
J:ASN284
|
3.5
|
73.0
|
1.0
|
|
C
|
J:ASP288
|
3.6
|
69.5
|
1.0
|
|
C
|
J:GLY334
|
3.8
|
70.1
|
1.0
|
|
CA
|
J:GLY332
|
4.0
|
72.4
|
1.0
|
|
CB
|
J:ASP314
|
4.2
|
67.9
|
1.0
|
|
CA
|
J:ALA289
|
4.3
|
78.0
|
1.0
|
|
CA
|
J:GLY335
|
4.3
|
70.6
|
1.0
|
|
CA
|
J:LEU285
|
4.3
|
74.6
|
1.0
|
|
N
|
J:LEU285
|
4.4
|
71.0
|
1.0
|
|
OD1
|
J:ASP314
|
4.4
|
73.0
|
1.0
|
|
N
|
J:ALA289
|
4.4
|
75.4
|
1.0
|
|
N
|
J:GLY335
|
4.5
|
71.6
|
1.0
|
|
N
|
J:GLY334
|
4.5
|
73.2
|
1.0
|
|
CA
|
J:ASN284
|
4.5
|
74.1
|
1.0
|
|
C
|
J:GLU333
|
4.6
|
74.9
|
1.0
|
|
O
|
J:LYS331
|
4.6
|
79.3
|
1.0
|
|
N
|
J:GLU333
|
4.6
|
74.8
|
1.0
|
|
N
|
J:ASP288
|
4.6
|
65.7
|
1.0
|
|
CB
|
J:ASN284
|
4.7
|
75.2
|
1.0
|
|
C
|
J:LEU285
|
4.7
|
77.5
|
1.0
|
|
CA
|
J:ASP288
|
4.7
|
68.4
|
1.0
|
|
CA
|
J:GLY334
|
4.8
|
70.4
|
1.0
|
|
O
|
J:PRO316
|
4.8
|
69.2
|
1.0
|
|
O
|
J:GLU333
|
4.8
|
68.9
|
1.0
|
|
N
|
J:ASN284
|
4.8
|
73.4
|
1.0
|
|
N
|
J:TRP286
|
4.9
|
79.3
|
1.0
|
|
CA
|
J:GLU333
|
4.9
|
78.4
|
1.0
|
|
Reference:
X.Zhu,
H.Yang,
Z.Guo,
W.Yu,
P.J.Carney,
Y.Li,
L.M.Chen,
J.C.Paulson,
R.O.Donis,
S.Tong,
J.Stevens,
I.A.Wilson.
Crystal Structures of Two Subtype N10 Neuraminidase-Like Proteins From Bat Influenza A Viruses Reveal A Diverged Putative Active Site. Proc.Natl.Acad.Sci.Usa V. 109 18903 2012.
ISSN: ISSN 0027-8424
PubMed: 23012478
DOI: 10.1073/PNAS.1212579109
Page generated: Sat Dec 12 04:47:49 2020
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