Calcium in PDB 4gw3: Crystal Structure of the Lipase From Proteus Mirabilis

All present enzymatic activity of Crystal Structure of the Lipase From Proteus Mirabilis:
3.1.1.3;

The structure of Crystal Structure of the Lipase From Proteus Mirabilis, PDB code: 4gw3 was solved by T.P.Korman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.13 / 2.00
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	65.438, 65.438, 63.966, 90.00, 90.00, 120.00
R / Rfree (%)	16.7 / 19.4

The binding sites of Calcium atom in the Crystal Structure of the Lipase From Proteus Mirabilis (pdb code 4gw3). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of the Lipase From Proteus Mirabilis, PDB code: 4gw3:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of the Lipase From Proteus Mirabilis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Lipase From Proteus Mirabilis within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca401 b:26.2 occ:1.00 OD1 A:ASP256 2.3 23.3 1.0 O A:HOH537 2.3 20.4 1.0 OD2 A:ASP213 2.3 28.2 1.0 O A:LEU264 2.3 25.6 1.0 O A:GLN260 2.5 23.0 1.0 OD1 A:ASN210 2.5 30.3 1.0 CG A:ASP213 3.4 28.7 1.0 C A:GLN260 3.4 23.2 1.0 CG A:ASP256 3.4 22.9 1.0 C A:LEU264 3.5 26.4 1.0 CG A:ASN210 3.5 30.2 1.0 N A:VAL261 3.5 24.1 1.0 ND2 A:ASN210 3.9 29.8 1.0 CB A:ASP213 4.0 29.9 1.0 CA A:VAL265 4.1 26.4 1.0 OD2 A:ASP256 4.2 23.0 1.0 N A:VAL265 4.2 26.7 1.0 OG1 A:THR215 4.2 26.1 1.0 CA A:ASP256 4.3 21.8 1.0 OD1 A:ASP213 4.3 28.6 1.0 N A:ASP256 4.4 21.4 1.0 CB A:ASP256 4.4 22.2 1.0 OD2 A:ASP253 4.6 22.1 1.0 CB A:LEU264 4.6 27.3 1.0 CA A:LEU264 4.7 26.9 1.0 OD1 A:ASP253 4.7 21.1 1.0 CG2 A:ILE255 4.7 22.1 1.0 CG1 A:VAL265 4.8 25.2 1.0 CA A:GLN260 4.8 22.6 1.0 CB A:ASN210 4.9 31.2 1.0 C A:ILE255 4.9 21.0 1.0 CA A:VAL261 5.0 24.7 1.0 C A:VAL265 5.0 27.4 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of the Lipase From Proteus Mirabilis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of the Lipase From Proteus Mirabilis within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca402 b:58.4 occ:1.00 O A:HOH666 2.6 35.3 1.0 OE1 A:GLU51 2.7 24.3 1.0 O A:HOH659 2.8 40.1 1.0 OD1 A:ASN50 3.1 20.8 1.0 N A:ASN50 3.5 20.0 1.0 CD A:GLU51 3.6 25.2 1.0 OE2 A:GLU51 3.7 26.6 1.0 CB A:ASN50 3.7 20.1 1.0 CG A:ASN50 3.8 20.0 1.0 CB A:SER49 4.1 21.9 1.0 CA A:ASN50 4.2 19.7 1.0 OE1 A:GLN164 4.2 24.6 1.0 O A:GLN164 4.3 19.0 1.0 CD1 A:PHE168 4.3 20.6 1.0 CB A:PHE168 4.4 18.3 1.0 CA A:SER49 4.4 20.8 1.0 C A:SER49 4.5 20.0 1.0 N A:GLU51 4.5 21.4 1.0 CG A:PHE168 4.8 19.1 1.0 O A:SER159 4.8 18.3 1.0 OG A:SER49 4.8 22.0 1.0 C A:ASN50 4.9 20.1 1.0 C A:GLN164 4.9 18.8 1.0 CB A:GLN164 5.0 20.2 1.0 CB A:SER159 5.0 20.0 1.0 CG A:GLU51 5.0 25.2 1.0

T.P.Korman, J.U.Bowie. Crystal Structure of Proteus Mirabilis Lipase, A Novel Lipase From the Proteus/Psychrophilic Subfamily of Lipase Family I.1. Plos One V. 7 52890 2012.
ISSN: ESSN 1932-6203
PubMed: 23300806
DOI: 10.1371/JOURNAL.PONE.0052890