Calcium in PDB 4h7d: Crystal Structure of Haloalkane Dehalogenase Linb T81A Mutant From Sphingobium Sp. MI1205

Protein crystallography data

The structure of Crystal Structure of Haloalkane Dehalogenase Linb T81A Mutant From Sphingobium Sp. MI1205, PDB code: 4h7d was solved by M.Okai, J.Ohtsuka, L.F.Imai, T.Mase, R.Moriuchi, M.Tsuda, K.Nagata, Y.Nagata, M.Tanokura, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.95
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 50.440, 72.057, 73.544, 90.00, 90.00, 90.00
R / Rfree (%) 17.7 / 21

Other elements in 4h7d:

The structure of Crystal Structure of Haloalkane Dehalogenase Linb T81A Mutant From Sphingobium Sp. MI1205 also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Haloalkane Dehalogenase Linb T81A Mutant From Sphingobium Sp. MI1205 (pdb code 4h7d). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Haloalkane Dehalogenase Linb T81A Mutant From Sphingobium Sp. MI1205, PDB code: 4h7d:

Calcium binding site 1 out of 1 in 4h7d

Go back to Calcium Binding Sites List in 4h7d
Calcium binding site 1 out of 1 in the Crystal Structure of Haloalkane Dehalogenase Linb T81A Mutant From Sphingobium Sp. MI1205


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Haloalkane Dehalogenase Linb T81A Mutant From Sphingobium Sp. MI1205 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca403

b:13.6
occ:1.00
O A:HOH526 2.3 11.2 1.0
O A:PRO175 2.3 16.0 1.0
O A:ILE178 2.3 14.2 1.0
O A:HOH521 2.3 14.2 1.0
C A:PRO175 3.4 15.1 1.0
C A:ILE178 3.5 14.6 1.0
N A:ILE178 4.2 14.0 1.0
CA A:PRO175 4.3 15.2 1.0
CA A:ILE178 4.3 14.3 1.0
N A:GLY176 4.3 14.6 1.0
CA A:GLY176 4.4 14.8 1.0
O A:ARG180 4.4 19.0 1.0
C A:GLY176 4.4 15.2 1.0
O A:HOH543 4.5 16.2 1.0
N A:LEU179 4.5 15.4 1.0
CB A:ILE178 4.5 14.0 1.0
O A:GLY176 4.5 15.1 1.0
O A:LEU179 4.6 17.7 1.0
C A:LEU179 4.6 17.1 1.0
CA A:LEU179 4.6 16.4 1.0
CB A:PRO175 4.6 15.5 1.0
N A:LEU177 4.9 14.6 1.0

Reference:

M.Okai, J.Ohtsuka, L.F.Imai, T.Mase, R.Moriuchi, M.Tsuda, K.Nagata, Y.Nagata, M.Tanokura. Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase Linb From Sphingobium Sp. Strain MI1205. J.Bacteriol. V. 195 2642 2013.
ISSN: ISSN 0021-9193
PubMed: 23564170
DOI: 10.1128/JB.02020-12
Page generated: Sat Dec 12 04:49:58 2020

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