Atomistry » Calcium » PDB 4h84-4hte » 4hro
Atomistry »
  Calcium »
    PDB 4h84-4hte »
      4hro »

Calcium in PDB 4hro: Crystal Structure of H. Volcanii Small Archaeal Modifier Protein 1

Protein crystallography data

The structure of Crystal Structure of H. Volcanii Small Archaeal Modifier Protein 1, PDB code: 4hro was solved by B.Hao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.06 / 1.15
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 27.928, 43.050, 61.974, 90.00, 102.84, 90.00
R / Rfree (%) 13.9 / 16.6

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of H. Volcanii Small Archaeal Modifier Protein 1 (pdb code 4hro). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 5 binding sites of Calcium where determined in the Crystal Structure of H. Volcanii Small Archaeal Modifier Protein 1, PDB code: 4hro:
Jump to Calcium binding site number: 1; 2; 3; 4; 5;

Calcium binding site 1 out of 5 in 4hro

Go back to Calcium Binding Sites List in 4hro
Calcium binding site 1 out of 5 in the Crystal Structure of H. Volcanii Small Archaeal Modifier Protein 1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of H. Volcanii Small Archaeal Modifier Protein 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca101

b:7.2
occ:1.00
OE2 A:GLU77 2.4 10.9 1.0
O A:HOH312 2.4 10.1 1.0
OE1 A:GLU77 2.5 8.8 1.0
CD A:GLU77 2.8 6.8 1.0
O A:HOH365 4.3 16.4 1.0
CG A:GLU77 4.3 7.1 1.0
O A:HOH358 4.4 19.5 1.0
O A:HOH278 4.4 28.9 1.0
O A:HOH209 4.5 9.7 1.0
O A:HOH244 4.6 17.7 1.0
O A:HOH351 4.9 29.4 1.0

Calcium binding site 2 out of 5 in 4hro

Go back to Calcium Binding Sites List in 4hro
Calcium binding site 2 out of 5 in the Crystal Structure of H. Volcanii Small Archaeal Modifier Protein 1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of H. Volcanii Small Archaeal Modifier Protein 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca102

b:9.3
occ:1.00
O A:GLY24 2.3 10.6 1.0
O A:THR72 2.3 7.7 1.0
O A:HOH219 2.4 13.4 1.0
O A:HOH218 2.4 11.7 1.0
O A:HOH228 2.4 8.9 1.0
O A:HOH258 2.4 13.8 1.0
O A:HOH248 2.5 9.2 1.0
C A:GLY24 3.5 10.7 1.0
C A:THR72 3.5 7.4 1.0
CA A:ASP25 4.1 11.2 1.0
N A:THR72 4.2 7.3 1.0
N A:ASP25 4.2 10.8 1.0
O A:HOH328 4.3 20.9 1.0
OG1 A:THR72 4.4 7.3 1.0
N A:ALA73 4.4 7.8 1.0
CA A:THR72 4.5 7.2 1.0
CA A:ALA73 4.5 8.6 1.0
CA A:GLY24 4.5 10.7 1.0
O A:ALA26 4.5 7.9 1.0
OD1 A:ASP25 4.6 17.1 1.0
O A:HOH239 4.6 18.6 1.0
C A:ASP25 4.7 10.1 1.0
O A:HOH303 4.7 19.7 1.0
N A:ALA26 4.7 9.3 1.0
O A:HOH238 4.8 14.3 1.0
CB A:ALA71 4.8 9.3 1.0
O A:ASP23 4.9 10.3 0.2
O A:ASP23 4.9 9.5 0.8
CB A:ALA73 5.0 10.6 1.0

Calcium binding site 3 out of 5 in 4hro

Go back to Calcium Binding Sites List in 4hro
Calcium binding site 3 out of 5 in the Crystal Structure of H. Volcanii Small Archaeal Modifier Protein 1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of H. Volcanii Small Archaeal Modifier Protein 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca103

b:8.4
occ:1.00
OD2 A:ASP49 2.3 10.6 1.0
CG A:ASP49 3.4 9.1 1.0
O A:HOH216 3.5 8.2 1.0
OD1 A:ASP49 4.0 9.1 1.0
CB A:ASP49 4.5 8.9 1.0

Calcium binding site 4 out of 5 in 4hro

Go back to Calcium Binding Sites List in 4hro
Calcium binding site 4 out of 5 in the Crystal Structure of H. Volcanii Small Archaeal Modifier Protein 1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of H. Volcanii Small Archaeal Modifier Protein 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca101

b:8.6
occ:1.00
OE2 B:GLU70 2.3 8.5 1.0
OE1 B:GLU64 2.3 10.8 1.0
O B:HOH314 2.4 9.1 1.0
O B:HOH201 2.4 8.2 1.0
CD B:GLU70 3.2 7.5 1.0
CD B:GLU64 3.4 11.8 1.0
OE1 B:GLU70 3.6 8.6 1.0
CG B:GLU64 4.1 11.9 1.0
NH1 B:ARG61 4.2 14.3 1.0
CB B:GLU64 4.3 10.7 1.0
O B:HOH245 4.3 20.8 1.0
OE2 B:GLU64 4.4 13.8 1.0
CG B:GLU70 4.5 8.1 1.0
O B:ALA65 4.6 10.9 1.0
O B:HOH204 4.6 13.2 1.0
CD B:ARG61 4.8 6.9 1.0
O B:HOH217 4.8 11.4 1.0
O B:ARG61 4.8 7.0 1.0

Calcium binding site 5 out of 5 in 4hro

Go back to Calcium Binding Sites List in 4hro
Calcium binding site 5 out of 5 in the Crystal Structure of H. Volcanii Small Archaeal Modifier Protein 1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of H. Volcanii Small Archaeal Modifier Protein 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca102

b:16.4
occ:1.00
O B:HOH294 2.3 19.4 1.0
O B:HOH319 2.3 15.7 1.0
O B:THR72 2.4 9.0 1.0
O B:HOH272 2.5 21.5 1.0
O B:GLY24 2.5 13.5 1.0
O B:HOH252 2.5 19.2 1.0
O B:HOH247 2.6 15.5 1.0
C B:THR72 3.6 7.5 1.0
C B:GLY24 3.6 12.1 1.0
CA B:ASP25 4.0 12.2 1.0
O B:HOH336 4.1 36.0 1.0
N B:THR72 4.2 7.5 1.0
N B:ASP25 4.2 12.4 1.0
OG1 B:THR72 4.4 8.0 1.0
O B:ALA26 4.4 9.4 1.0
N B:ALA73 4.5 7.5 1.0
CA B:THR72 4.5 7.4 1.0
C B:ASP25 4.5 11.4 1.0
CA B:ALA73 4.5 8.2 1.0
O B:HOH281 4.6 29.5 1.0
N B:ALA26 4.6 11.0 1.0
O B:HOH256 4.6 21.5 1.0
CA B:GLY24 4.7 11.4 1.0
OD2 B:ASP25 4.7 18.2 1.0
CB B:ALA71 4.8 9.9 0.8
O B:HOH274 4.9 23.2 1.0
CB B:ALA71 4.9 5.0 0.2
O B:HOH266 4.9 23.7 1.0
C B:ALA71 4.9 9.0 0.8

Reference:

Y.Li, M.W.Maciejewski, K.Jin, J.Martin, Y.Zhang, M.Lu, J.A.Maupin-Furlow, B.Hao. Crystal Structure of H. Volcanii Small Archaeal Modifier Protein 1 To Be Published.
Page generated: Sun Jul 14 07:51:57 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy