Calcium in PDB 4hsz: Structure of Truncated (DELTA8C) S100A4
Protein crystallography data
The structure of Structure of Truncated (DELTA8C) S100A4, PDB code: 4hsz
was solved by
U.A.Ramagopal,
N.G.Dulyaninova,
P.R.Kumar,
S.C.Almo,
A.R.Bresnick,
Newyork Structural Genomics Research Consortium (Nysgrc),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
46.93 /
2.25
|
|
Space group
|
P 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
28.802,
34.356,
95.313,
95.49,
95.29,
114.82
|
|
R / Rfree (%)
|
22.8 /
27.7
|
Calcium Binding Sites:
The binding sites of Calcium atom in the Structure of Truncated (DELTA8C) S100A4
(pdb code 4hsz). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the
Structure of Truncated (DELTA8C) S100A4, PDB code: 4hsz:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Calcium binding site 1 out
of 8 in 4hsz
Go back to
Calcium Binding Sites List in 4hsz
Calcium binding site 1 out
of 8 in the Structure of Truncated (DELTA8C) S100A4
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Structure of Truncated (DELTA8C) S100A4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca101
b:68.9
occ:1.00
|
O
|
A:LYS28
|
2.1
|
65.1
|
1.0
|
|
O
|
A:ASP25
|
2.2
|
68.0
|
1.0
|
|
O
|
A:HOH201
|
2.2
|
64.0
|
1.0
|
|
O
|
A:SER20
|
2.4
|
67.3
|
1.0
|
|
OE1
|
A:GLU33
|
2.4
|
71.2
|
1.0
|
|
O
|
A:GLU23
|
2.7
|
87.2
|
1.0
|
|
OE2
|
A:GLU33
|
2.8
|
66.7
|
1.0
|
|
CD
|
A:GLU33
|
3.0
|
69.0
|
1.0
|
|
C
|
A:LYS28
|
3.3
|
64.2
|
1.0
|
|
C
|
A:ASP25
|
3.4
|
69.0
|
1.0
|
|
C
|
A:SER20
|
3.6
|
67.8
|
1.0
|
|
C
|
A:GLU23
|
3.9
|
89.1
|
1.0
|
|
N
|
A:ASP25
|
4.1
|
76.9
|
1.0
|
|
OE1
|
A:GLU69
|
4.1
|
83.4
|
1.0
|
|
CA
|
A:SER20
|
4.1
|
64.8
|
1.0
|
|
N
|
A:LYS28
|
4.2
|
64.7
|
1.0
|
|
N
|
A:ASN30
|
4.2
|
69.6
|
1.0
|
|
CA
|
A:ASP25
|
4.2
|
72.7
|
1.0
|
|
N
|
A:LEU29
|
4.2
|
63.5
|
1.0
|
|
CA
|
A:LYS28
|
4.3
|
64.6
|
1.0
|
|
ND2
|
A:ASN30
|
4.3
|
78.6
|
1.0
|
|
CA
|
A:LEU29
|
4.3
|
64.6
|
1.0
|
|
N
|
A:LYS26
|
4.3
|
67.8
|
1.0
|
|
C
|
A:GLY24
|
4.4
|
80.3
|
1.0
|
|
CA
|
A:LYS26
|
4.5
|
66.9
|
1.0
|
|
CG
|
A:GLU33
|
4.5
|
67.7
|
1.0
|
|
CB
|
A:ASP25
|
4.6
|
71.9
|
1.0
|
|
N
|
A:GLU23
|
4.6
|
88.9
|
1.0
|
|
CB
|
A:SER20
|
4.6
|
62.5
|
1.0
|
|
C
|
A:LYS26
|
4.7
|
64.8
|
1.0
|
|
C
|
A:LEU29
|
4.7
|
66.4
|
1.0
|
|
N
|
A:GLY21
|
4.7
|
69.9
|
1.0
|
|
CB
|
A:LYS28
|
4.7
|
66.5
|
1.0
|
|
CA
|
A:GLU23
|
4.8
|
90.7
|
1.0
|
|
N
|
A:PHE27
|
4.8
|
64.4
|
1.0
|
|
N
|
A:GLY24
|
4.8
|
89.3
|
1.0
|
|
CG
|
A:ASN30
|
4.9
|
76.5
|
1.0
|
|
CA
|
A:GLY24
|
4.9
|
85.4
|
1.0
|
|
O
|
A:GLY24
|
4.9
|
80.7
|
1.0
|
|
CB
|
A:ASN30
|
5.0
|
75.5
|
1.0
|
|
Calcium binding site 2 out
of 8 in 4hsz
Go back to
Calcium Binding Sites List in 4hsz
Calcium binding site 2 out
of 8 in the Structure of Truncated (DELTA8C) S100A4
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Structure of Truncated (DELTA8C) S100A4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca102
b:66.3
occ:1.00
|
OD1
|
A:ASP67
|
2.2
|
71.8
|
1.0
|
|
O
|
A:GLU69
|
2.3
|
66.3
|
1.0
|
|
OD1
|
A:ASN65
|
2.3
|
74.7
|
1.0
|
|
O
|
A:HOH202
|
2.4
|
64.4
|
1.0
|
|
OE1
|
A:GLU74
|
2.5
|
53.9
|
1.0
|
|
OE2
|
A:GLU74
|
2.5
|
59.4
|
1.0
|
|
OD1
|
A:ASP63
|
2.6
|
73.5
|
1.0
|
|
CD
|
A:GLU74
|
2.8
|
55.1
|
1.0
|
|
CG
|
A:ASP67
|
3.2
|
74.5
|
1.0
|
|
C
|
A:GLU69
|
3.4
|
66.2
|
1.0
|
|
CG
|
A:ASN65
|
3.4
|
76.1
|
1.0
|
|
OD2
|
A:ASP67
|
3.5
|
71.0
|
1.0
|
|
CG
|
A:ASP63
|
3.6
|
75.9
|
1.0
|
|
ND2
|
A:ASN65
|
4.0
|
77.8
|
1.0
|
|
CA
|
A:ASP63
|
4.2
|
72.3
|
1.0
|
|
CA
|
A:VAL70
|
4.2
|
59.1
|
1.0
|
|
N
|
A:VAL70
|
4.2
|
62.3
|
1.0
|
|
CB
|
A:ASP63
|
4.2
|
72.9
|
1.0
|
|
N
|
A:ASP71
|
4.3
|
54.6
|
1.0
|
|
CG
|
A:GLU74
|
4.3
|
51.1
|
1.0
|
|
N
|
A:ASP67
|
4.4
|
79.9
|
1.0
|
|
N
|
A:GLU69
|
4.4
|
74.2
|
1.0
|
|
CA
|
A:GLU69
|
4.4
|
69.8
|
1.0
|
|
CB
|
A:ASP67
|
4.4
|
78.7
|
1.0
|
|
OD2
|
A:ASP63
|
4.5
|
76.5
|
1.0
|
|
C
|
A:ASP63
|
4.5
|
74.4
|
1.0
|
|
OD2
|
A:ASP71
|
4.5
|
60.5
|
1.0
|
|
N
|
A:ASN65
|
4.6
|
77.8
|
1.0
|
|
CB
|
A:ASN65
|
4.7
|
78.6
|
1.0
|
|
N
|
A:SER64
|
4.8
|
73.6
|
1.0
|
|
C
|
A:VAL70
|
4.8
|
56.1
|
1.0
|
|
CG
|
A:ASP71
|
4.8
|
59.0
|
1.0
|
|
CB
|
A:GLU69
|
4.8
|
68.9
|
1.0
|
|
CA
|
A:ASP67
|
4.8
|
80.1
|
1.0
|
|
N
|
A:ARG66
|
4.8
|
81.7
|
1.0
|
|
CA
|
A:ASN65
|
5.0
|
80.5
|
1.0
|
|
C
|
A:ASN65
|
5.0
|
82.3
|
1.0
|
|
Calcium binding site 3 out
of 8 in 4hsz
Go back to
Calcium Binding Sites List in 4hsz
Calcium binding site 3 out
of 8 in the Structure of Truncated (DELTA8C) S100A4
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Structure of Truncated (DELTA8C) S100A4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca101
b:47.7
occ:1.00
|
O
|
B:ASP25
|
2.4
|
44.1
|
1.0
|
|
O
|
B:LYS28
|
2.4
|
36.4
|
1.0
|
|
OE1
|
B:GLU33
|
2.4
|
39.4
|
1.0
|
|
O
|
B:GLU23
|
2.5
|
45.2
|
1.0
|
|
O
|
B:SER20
|
2.7
|
39.4
|
1.0
|
|
OE2
|
B:GLU33
|
3.0
|
43.6
|
1.0
|
|
CD
|
B:GLU33
|
3.0
|
41.1
|
1.0
|
|
C
|
B:ASP25
|
3.5
|
43.3
|
1.0
|
|
C
|
B:LYS28
|
3.6
|
35.9
|
1.0
|
|
C
|
B:GLU23
|
3.7
|
45.8
|
1.0
|
|
C
|
B:SER20
|
3.8
|
38.0
|
1.0
|
|
N
|
B:ASP25
|
4.0
|
44.9
|
1.0
|
|
OE2
|
B:GLU69
|
4.1
|
58.9
|
1.0
|
|
N
|
B:ASN30
|
4.2
|
37.2
|
1.0
|
|
C
|
B:GLY24
|
4.2
|
45.7
|
1.0
|
|
CA
|
B:ASP25
|
4.2
|
44.5
|
1.0
|
|
CA
|
B:SER20
|
4.3
|
35.8
|
1.0
|
|
N
|
B:GLU23
|
4.4
|
46.6
|
1.0
|
|
CA
|
B:LEU29
|
4.4
|
35.3
|
1.0
|
|
CG
|
B:GLU33
|
4.4
|
36.2
|
1.0
|
|
N
|
B:LEU29
|
4.5
|
35.4
|
1.0
|
|
N
|
B:LYS28
|
4.5
|
35.8
|
1.0
|
|
N
|
B:LYS26
|
4.5
|
41.9
|
1.0
|
|
CA
|
B:GLU23
|
4.5
|
47.1
|
1.0
|
|
O
|
B:GLY24
|
4.5
|
46.3
|
1.0
|
|
CA
|
B:LYS28
|
4.6
|
36.8
|
1.0
|
|
N
|
B:GLY24
|
4.6
|
46.5
|
1.0
|
|
C
|
B:LEU29
|
4.6
|
37.0
|
1.0
|
|
CA
|
B:LYS26
|
4.6
|
41.4
|
1.0
|
|
CB
|
B:ASP25
|
4.6
|
43.4
|
1.0
|
|
CA
|
B:GLY24
|
4.7
|
46.2
|
1.0
|
|
O
|
B:HOH201
|
4.8
|
49.5
|
1.0
|
|
ND2
|
B:ASN30
|
4.8
|
40.5
|
1.0
|
|
CB
|
B:ASN30
|
4.8
|
39.6
|
1.0
|
|
CG
|
B:ASN30
|
4.9
|
41.0
|
1.0
|
|
CB
|
B:SER20
|
4.9
|
34.2
|
1.0
|
|
CB
|
B:GLU23
|
4.9
|
46.9
|
1.0
|
|
N
|
B:GLY21
|
4.9
|
39.0
|
1.0
|
|
C
|
B:LYS26
|
5.0
|
38.5
|
1.0
|
|
CB
|
B:LYS28
|
5.0
|
38.4
|
1.0
|
|
Calcium binding site 4 out
of 8 in 4hsz
Go back to
Calcium Binding Sites List in 4hsz
Calcium binding site 4 out
of 8 in the Structure of Truncated (DELTA8C) S100A4
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Structure of Truncated (DELTA8C) S100A4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca102
b:44.9
occ:1.00
|
O
|
B:GLU69
|
2.1
|
39.3
|
1.0
|
|
O
|
B:HOH202
|
2.1
|
37.0
|
1.0
|
|
OD1
|
B:ASN65
|
2.1
|
57.7
|
1.0
|
|
OD1
|
B:ASP63
|
2.2
|
48.5
|
1.0
|
|
OD1
|
B:ASP67
|
2.3
|
53.0
|
1.0
|
|
OE1
|
B:GLU74
|
2.4
|
42.9
|
1.0
|
|
OE2
|
B:GLU74
|
2.5
|
41.2
|
1.0
|
|
CD
|
B:GLU74
|
2.8
|
43.7
|
1.0
|
|
CG
|
B:ASN65
|
3.1
|
51.9
|
1.0
|
|
CG
|
B:ASP67
|
3.2
|
52.9
|
1.0
|
|
C
|
B:GLU69
|
3.3
|
41.6
|
1.0
|
|
CG
|
B:ASP63
|
3.4
|
42.5
|
1.0
|
|
ND2
|
B:ASN65
|
3.4
|
50.3
|
1.0
|
|
OD2
|
B:ASP67
|
3.6
|
50.0
|
1.0
|
|
CA
|
B:ASP63
|
4.1
|
43.8
|
1.0
|
|
N
|
B:GLU69
|
4.1
|
48.0
|
1.0
|
|
CB
|
B:ASP63
|
4.2
|
43.2
|
1.0
|
|
CA
|
B:VAL70
|
4.2
|
35.2
|
1.0
|
|
N
|
B:VAL70
|
4.2
|
37.6
|
1.0
|
|
OD2
|
B:ASP63
|
4.3
|
44.9
|
1.0
|
|
CG
|
B:GLU74
|
4.3
|
40.1
|
1.0
|
|
N
|
B:ASP67
|
4.3
|
56.7
|
1.0
|
|
N
|
B:ASP71
|
4.3
|
35.0
|
1.0
|
|
N
|
B:ASN65
|
4.3
|
52.7
|
1.0
|
|
CA
|
B:GLU69
|
4.3
|
44.3
|
1.0
|
|
CB
|
B:ASN65
|
4.3
|
54.3
|
1.0
|
|
OD2
|
B:ASP71
|
4.4
|
47.3
|
1.0
|
|
C
|
B:ASP63
|
4.4
|
46.2
|
1.0
|
|
CB
|
B:ASP67
|
4.4
|
54.9
|
1.0
|
|
CA
|
B:ASN65
|
4.6
|
55.8
|
1.0
|
|
N
|
B:ARG66
|
4.6
|
58.3
|
1.0
|
|
N
|
B:SER64
|
4.7
|
47.0
|
1.0
|
|
C
|
B:ASN65
|
4.7
|
58.5
|
1.0
|
|
CA
|
B:ASP67
|
4.7
|
55.9
|
1.0
|
|
C
|
B:VAL70
|
4.7
|
34.3
|
1.0
|
|
CG
|
B:ASP71
|
4.8
|
43.9
|
1.0
|
|
O
|
B:ASP63
|
4.9
|
48.2
|
1.0
|
|
N
|
B:ASN68
|
4.9
|
53.8
|
1.0
|
|
C
|
B:ASP67
|
4.9
|
54.5
|
1.0
|
|
Calcium binding site 5 out
of 8 in 4hsz
Go back to
Calcium Binding Sites List in 4hsz
Calcium binding site 5 out
of 8 in the Structure of Truncated (DELTA8C) S100A4
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Structure of Truncated (DELTA8C) S100A4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca101
b:44.8
occ:1.00
|
O
|
C:ASP25
|
2.3
|
41.5
|
1.0
|
|
O
|
C:LYS28
|
2.4
|
37.1
|
1.0
|
|
O
|
C:GLU23
|
2.4
|
40.6
|
1.0
|
|
OE1
|
C:GLU33
|
2.4
|
38.1
|
1.0
|
|
O
|
C:SER20
|
2.4
|
37.8
|
1.0
|
|
OE2
|
C:GLU33
|
2.8
|
38.9
|
1.0
|
|
CD
|
C:GLU33
|
2.9
|
37.2
|
1.0
|
|
C
|
C:ASP25
|
3.4
|
44.0
|
1.0
|
|
C
|
C:SER20
|
3.5
|
36.9
|
1.0
|
|
C
|
C:GLU23
|
3.6
|
43.2
|
1.0
|
|
C
|
C:LYS28
|
3.6
|
38.2
|
1.0
|
|
CA
|
C:SER20
|
4.0
|
35.9
|
1.0
|
|
N
|
C:ASP25
|
4.1
|
44.5
|
1.0
|
|
N
|
C:GLU23
|
4.1
|
42.4
|
1.0
|
|
OE1
|
C:GLU69
|
4.1
|
56.5
|
1.0
|
|
CA
|
C:ASP25
|
4.3
|
45.2
|
1.0
|
|
N
|
C:LYS26
|
4.3
|
44.7
|
1.0
|
|
CA
|
C:GLU23
|
4.3
|
44.1
|
1.0
|
|
N
|
C:LYS28
|
4.4
|
40.5
|
1.0
|
|
CA
|
C:LYS26
|
4.4
|
45.8
|
1.0
|
|
O
|
C:HOH201
|
4.4
|
67.5
|
1.0
|
|
C
|
C:GLY24
|
4.4
|
45.1
|
1.0
|
|
N
|
C:ASN30
|
4.4
|
37.4
|
1.0
|
|
CG
|
C:GLU33
|
4.4
|
38.8
|
1.0
|
|
CA
|
C:LYS28
|
4.5
|
39.7
|
1.0
|
|
N
|
C:LEU29
|
4.5
|
37.0
|
1.0
|
|
CA
|
C:LEU29
|
4.5
|
36.1
|
1.0
|
|
N
|
C:GLY24
|
4.6
|
43.3
|
1.0
|
|
N
|
C:GLY21
|
4.6
|
38.4
|
1.0
|
|
CB
|
C:SER20
|
4.7
|
35.3
|
1.0
|
|
CB
|
C:GLU23
|
4.7
|
44.5
|
1.0
|
|
C
|
C:LYS26
|
4.7
|
44.3
|
1.0
|
|
CB
|
C:ASP25
|
4.8
|
44.0
|
1.0
|
|
CA
|
C:GLY24
|
4.8
|
44.0
|
1.0
|
|
O
|
C:TYR19
|
4.8
|
36.1
|
1.0
|
|
C
|
C:LEU29
|
4.9
|
37.4
|
1.0
|
|
O
|
C:GLY24
|
4.9
|
45.1
|
1.0
|
|
N
|
C:LYS22
|
4.9
|
41.2
|
1.0
|
|
ND2
|
C:ASN30
|
4.9
|
35.5
|
1.0
|
|
CG
|
C:ASN30
|
4.9
|
39.9
|
1.0
|
|
CB
|
C:LYS28
|
5.0
|
41.1
|
1.0
|
|
Calcium binding site 6 out
of 8 in 4hsz
Go back to
Calcium Binding Sites List in 4hsz
Calcium binding site 6 out
of 8 in the Structure of Truncated (DELTA8C) S100A4
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Structure of Truncated (DELTA8C) S100A4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca102
b:45.1
occ:1.00
|
O
|
C:HOH202
|
2.1
|
46.6
|
1.0
|
|
OD1
|
C:ASN65
|
2.2
|
56.0
|
1.0
|
|
OD1
|
C:ASP63
|
2.2
|
46.1
|
1.0
|
|
O
|
C:GLU69
|
2.3
|
41.2
|
1.0
|
|
OE1
|
C:GLU74
|
2.3
|
44.4
|
1.0
|
|
OD1
|
C:ASP67
|
2.6
|
49.3
|
1.0
|
|
OE2
|
C:GLU74
|
2.6
|
43.0
|
1.0
|
|
CD
|
C:GLU74
|
2.8
|
41.6
|
1.0
|
|
CG
|
C:ASN65
|
3.2
|
54.5
|
1.0
|
|
CG
|
C:ASP67
|
3.3
|
51.4
|
1.0
|
|
CG
|
C:ASP63
|
3.3
|
45.0
|
1.0
|
|
C
|
C:GLU69
|
3.4
|
42.3
|
1.0
|
|
OD2
|
C:ASP67
|
3.6
|
52.2
|
1.0
|
|
ND2
|
C:ASN65
|
3.6
|
51.3
|
1.0
|
|
CA
|
C:ASP63
|
4.0
|
45.2
|
1.0
|
|
CB
|
C:ASP63
|
4.0
|
44.4
|
1.0
|
|
N
|
C:GLU69
|
4.2
|
46.3
|
1.0
|
|
N
|
C:ASP67
|
4.2
|
53.2
|
1.0
|
|
OD2
|
C:ASP71
|
4.2
|
49.8
|
1.0
|
|
CA
|
C:VAL70
|
4.2
|
35.0
|
1.0
|
|
N
|
C:VAL70
|
4.2
|
37.1
|
1.0
|
|
N
|
C:ASP71
|
4.3
|
35.9
|
1.0
|
|
N
|
C:ASN65
|
4.3
|
55.0
|
1.0
|
|
CG
|
C:GLU74
|
4.3
|
38.2
|
1.0
|
|
OD2
|
C:ASP63
|
4.3
|
42.1
|
1.0
|
|
CA
|
C:GLU69
|
4.3
|
43.9
|
1.0
|
|
N
|
C:ARG66
|
4.4
|
57.3
|
1.0
|
|
CB
|
C:ASN65
|
4.4
|
56.9
|
1.0
|
|
C
|
C:ASP63
|
4.4
|
49.0
|
1.0
|
|
CB
|
C:ASP67
|
4.5
|
50.7
|
1.0
|
|
N
|
C:SER64
|
4.6
|
50.6
|
1.0
|
|
CA
|
C:ASN65
|
4.6
|
57.5
|
1.0
|
|
C
|
C:ASN65
|
4.7
|
58.9
|
1.0
|
|
CG
|
C:ASP71
|
4.7
|
47.5
|
1.0
|
|
C
|
C:VAL70
|
4.7
|
34.3
|
1.0
|
|
CA
|
C:ASP67
|
4.8
|
52.1
|
1.0
|
|
CB
|
C:GLU69
|
4.9
|
43.9
|
1.0
|
|
N
|
C:ASN68
|
4.9
|
49.0
|
1.0
|
|
C
|
C:ASP67
|
5.0
|
49.7
|
1.0
|
|
Calcium binding site 7 out
of 8 in 4hsz
Go back to
Calcium Binding Sites List in 4hsz
Calcium binding site 7 out
of 8 in the Structure of Truncated (DELTA8C) S100A4
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Structure of Truncated (DELTA8C) S100A4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca101
b:73.6
occ:1.00
|
O
|
D:LYS28
|
2.3
|
66.4
|
1.0
|
|
OE1
|
D:GLU33
|
2.3
|
67.1
|
1.0
|
|
O
|
D:ASP25
|
2.3
|
73.3
|
1.0
|
|
O
|
D:SER20
|
2.5
|
66.9
|
1.0
|
|
O
|
D:GLU23
|
2.6
|
81.9
|
1.0
|
|
OE2
|
D:GLU33
|
2.8
|
64.6
|
1.0
|
|
CD
|
D:GLU33
|
2.9
|
66.5
|
1.0
|
|
C
|
D:ASP25
|
3.5
|
73.6
|
1.0
|
|
C
|
D:LYS28
|
3.5
|
65.2
|
1.0
|
|
C
|
D:SER20
|
3.6
|
66.3
|
1.0
|
|
C
|
D:GLU23
|
3.7
|
84.9
|
1.0
|
|
ND2
|
D:ASN30
|
4.0
|
76.5
|
1.0
|
|
N
|
D:ASP25
|
4.0
|
78.5
|
1.0
|
|
CA
|
D:SER20
|
4.2
|
63.1
|
1.0
|
|
OE2
|
D:GLU69
|
4.2
|
83.9
|
1.0
|
|
CA
|
D:ASP25
|
4.2
|
75.8
|
1.0
|
|
N
|
D:ASN30
|
4.3
|
69.2
|
1.0
|
|
N
|
D:GLU23
|
4.3
|
85.0
|
1.0
|
|
N
|
D:LYS28
|
4.3
|
65.9
|
1.0
|
|
C
|
D:GLY24
|
4.4
|
80.9
|
1.0
|
|
CA
|
D:LEU29
|
4.4
|
64.5
|
1.0
|
|
N
|
D:LEU29
|
4.4
|
63.7
|
1.0
|
|
CG
|
D:GLU33
|
4.4
|
64.2
|
1.0
|
|
CA
|
D:LYS28
|
4.4
|
65.1
|
1.0
|
|
N
|
D:LYS26
|
4.5
|
73.1
|
1.0
|
|
CA
|
D:GLU23
|
4.5
|
86.6
|
1.0
|
|
CB
|
D:ASP25
|
4.6
|
74.8
|
1.0
|
|
N
|
D:GLY24
|
4.7
|
85.8
|
1.0
|
|
CA
|
D:LYS26
|
4.7
|
71.6
|
1.0
|
|
CB
|
D:SER20
|
4.7
|
60.6
|
1.0
|
|
N
|
D:GLY21
|
4.7
|
68.3
|
1.0
|
|
CA
|
D:GLY24
|
4.8
|
83.4
|
1.0
|
|
CG
|
D:ASN30
|
4.8
|
74.8
|
1.0
|
|
C
|
D:LEU29
|
4.8
|
66.2
|
1.0
|
|
O
|
D:GLY24
|
4.8
|
80.6
|
1.0
|
|
C
|
D:LYS26
|
4.9
|
69.1
|
1.0
|
|
CB
|
D:GLU23
|
4.9
|
88.2
|
1.0
|
|
CB
|
D:LYS28
|
5.0
|
66.6
|
1.0
|
|
O
|
D:TYR19
|
5.0
|
65.8
|
1.0
|
|
N
|
D:PHE27
|
5.0
|
68.4
|
1.0
|
|
Calcium binding site 8 out
of 8 in 4hsz
Go back to
Calcium Binding Sites List in 4hsz
Calcium binding site 8 out
of 8 in the Structure of Truncated (DELTA8C) S100A4
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Structure of Truncated (DELTA8C) S100A4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca102
b:77.8
occ:1.00
|
O
|
D:GLU69
|
2.1
|
70.8
|
1.0
|
|
OD1
|
D:ASN65
|
2.2
|
80.9
|
1.0
|
|
OD1
|
D:ASP67
|
2.3
|
83.0
|
1.0
|
|
OE1
|
D:GLU74
|
2.4
|
52.1
|
1.0
|
|
OD1
|
D:ASP63
|
2.7
|
71.9
|
1.0
|
|
OE2
|
D:GLU74
|
2.9
|
56.4
|
1.0
|
|
CD
|
D:GLU74
|
3.0
|
54.0
|
1.0
|
|
CG
|
D:ASN65
|
3.1
|
83.5
|
1.0
|
|
C
|
D:GLU69
|
3.2
|
70.1
|
1.0
|
|
CG
|
D:ASP67
|
3.3
|
82.8
|
1.0
|
|
ND2
|
D:ASN65
|
3.5
|
82.2
|
1.0
|
|
OD2
|
D:ASP67
|
3.6
|
75.3
|
1.0
|
|
CG
|
D:ASP63
|
3.7
|
76.3
|
1.0
|
|
CA
|
D:VAL70
|
3.9
|
60.5
|
1.0
|
|
N
|
D:VAL70
|
4.0
|
64.8
|
1.0
|
|
N
|
D:ASP71
|
4.1
|
54.9
|
1.0
|
|
CA
|
D:ASP63
|
4.2
|
74.3
|
1.0
|
|
CA
|
D:GLU69
|
4.3
|
74.0
|
1.0
|
|
N
|
D:GLU69
|
4.4
|
78.8
|
1.0
|
|
CB
|
D:ASP63
|
4.4
|
75.0
|
1.0
|
|
CB
|
D:ASN65
|
4.5
|
84.7
|
1.0
|
|
CG
|
D:GLU74
|
4.5
|
52.2
|
1.0
|
|
C
|
D:VAL70
|
4.5
|
57.5
|
1.0
|
|
OD2
|
D:ASP63
|
4.6
|
75.8
|
1.0
|
|
N
|
D:ASP67
|
4.6
|
88.0
|
1.0
|
|
OD2
|
D:ASP71
|
4.7
|
58.8
|
1.0
|
|
CB
|
D:ASP67
|
4.7
|
87.5
|
1.0
|
|
CG
|
D:ASP71
|
4.7
|
59.1
|
1.0
|
|
C
|
D:ASP63
|
4.8
|
77.2
|
1.0
|
|
N
|
D:ASN65
|
4.9
|
83.8
|
1.0
|
|
CB
|
D:GLU69
|
4.9
|
74.8
|
1.0
|
|
N
|
D:ARG66
|
4.9
|
88.3
|
1.0
|
|
Reference:
U.A.Ramagopal,
N.G.Dulyaninova,
P.R.Kumar,
S.C.Almo,
A.R.Bresnick.
Structure of Truncated (DELTA8C) S100A4 To Be Published.
Page generated: Sun Jul 14 07:53:02 2024
|
