Calcium in PDB 4iau: Atomic Resolution Structure of Geodin, A Beta-Gamma Crystallin From Geodia Cydonium

The structure of Atomic Resolution Structure of Geodin, A Beta-Gamma Crystallin From Geodia Cydonium, PDB code: 4iau was solved by A.Vergara, M.Grassi, F.Sica, L.Mazzarella, A.Merlino, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 0.99
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	24.170, 61.302, 50.175, 90.00, 95.45, 90.00
R / Rfree (%)	10.6 / 12.9

The binding sites of Calcium atom in the Atomic Resolution Structure of Geodin, A Beta-Gamma Crystallin From Geodia Cydonium (pdb code 4iau). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Atomic Resolution Structure of Geodin, A Beta-Gamma Crystallin From Geodia Cydonium, PDB code: 4iau:

Calcium binding site 1 out of 1 in the Atomic Resolution Structure of Geodin, A Beta-Gamma Crystallin From Geodia Cydonium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Atomic Resolution Structure of Geodin, A Beta-Gamma Crystallin From Geodia Cydonium within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca800 b:10.3 occ:1.00 O A:LYS90 2.3 7.8 1.0 O A:HOH1042 2.3 12.9 1.0 OG A:SER114 2.4 8.0 1.0 OD1 A:ASP154 2.4 10.4 1.0 O2 A:GOL801 2.4 10.7 1.0 O A:GLY112 2.5 9.1 1.0 O1 A:GOL801 2.5 12.4 1.0 C2 A:GOL801 3.4 12.0 1.0 C1 A:GOL801 3.4 13.8 1.0 CG A:ASP154 3.4 10.9 1.0 C A:GLY112 3.5 8.1 1.0 C A:LYS90 3.5 5.9 1.0 CB A:SER114 3.5 7.3 1.0 OD2 A:ASP154 3.8 14.1 1.0 C3 A:GOL801 4.0 12.5 1.0 N A:SER114 4.1 6.1 1.0 CG A:LYS90 4.1 8.1 1.0 CA A:GLY112 4.1 9.0 1.0 C A:VAL113 4.2 6.4 1.0 CA A:LYS90 4.3 6.1 1.0 CA A:SER114 4.4 6.5 1.0 N A:VAL113 4.4 7.3 1.0 O A:GLY111 4.4 10.8 1.0 N A:HIS91 4.4 6.0 1.0 OD1 A:ASN153 4.4 10.7 1.0 O A:VAL113 4.5 7.4 1.0 CA A:HIS91 4.5 6.0 1.0 O A:HOH1225 4.5 40.1 1.0 ND1 A:HIS91 4.6 6.6 1.0 O3 A:GOL801 4.6 9.8 1.0 ND2 A:ASN153 4.6 14.1 1.0 CA A:VAL113 4.7 6.6 1.0 CB A:ASP154 4.7 10.1 1.0 CB A:LYS90 4.8 6.9 1.0 N A:GLY112 4.9 8.7 1.0 CG A:ASN153 4.9 10.2 1.0 CA A:ASP154 5.0 8.9 1.0 C A:GLY111 5.0 9.3 1.0

A.Vergara, M.Grassi, F.Sica, E.Pizzo, G.D'alessio, L.Mazzarella, A.Merlino. A Novel Interdomain Interface in Crystallins: Structural Characterization of the [Beta][Gamma]-Crystallin From Geodia Cydonium at 0.99 A Resolution Acta Crystallogr.,Sect.D V. 69 960 2013.
ISSN: ISSN 0907-4449
PubMed: 23695240
DOI: 10.1107/S0907444913003569