Atomistry » Calcium » PDB 4iai-4iun » 4iav
Atomistry »
  Calcium »
    PDB 4iai-4iun »
      4iav »

Calcium in PDB 4iav: G215S, A251G, T257A, D260G, T262D Mutant of Carboxypeptidase T From Thermoactinomyces Vulgaris with N-Sulfamoyl-L-Phenylalanine

Enzymatic activity of G215S, A251G, T257A, D260G, T262D Mutant of Carboxypeptidase T From Thermoactinomyces Vulgaris with N-Sulfamoyl-L-Phenylalanine

All present enzymatic activity of G215S, A251G, T257A, D260G, T262D Mutant of Carboxypeptidase T From Thermoactinomyces Vulgaris with N-Sulfamoyl-L-Phenylalanine:
3.4.17.18;

Protein crystallography data

The structure of G215S, A251G, T257A, D260G, T262D Mutant of Carboxypeptidase T From Thermoactinomyces Vulgaris with N-Sulfamoyl-L-Phenylalanine, PDB code: 4iav was solved by V.I.Timofeev, S.A.Kuznetsov, V.K.Akparov, I.P.Kuranova, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.35
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 157.722, 157.722, 104.461, 90.00, 90.00, 120.00
R / Rfree (%) 13.9 / 15.4

Other elements in 4iav:

The structure of G215S, A251G, T257A, D260G, T262D Mutant of Carboxypeptidase T From Thermoactinomyces Vulgaris with N-Sulfamoyl-L-Phenylalanine also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the G215S, A251G, T257A, D260G, T262D Mutant of Carboxypeptidase T From Thermoactinomyces Vulgaris with N-Sulfamoyl-L-Phenylalanine (pdb code 4iav). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 5 binding sites of Calcium where determined in the G215S, A251G, T257A, D260G, T262D Mutant of Carboxypeptidase T From Thermoactinomyces Vulgaris with N-Sulfamoyl-L-Phenylalanine, PDB code: 4iav:
Jump to Calcium binding site number: 1; 2; 3; 4; 5;

Calcium binding site 1 out of 5 in 4iav

Go back to Calcium Binding Sites List in 4iav
Calcium binding site 1 out of 5 in the G215S, A251G, T257A, D260G, T262D Mutant of Carboxypeptidase T From Thermoactinomyces Vulgaris with N-Sulfamoyl-L-Phenylalanine


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of G215S, A251G, T257A, D260G, T262D Mutant of Carboxypeptidase T From Thermoactinomyces Vulgaris with N-Sulfamoyl-L-Phenylalanine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca403

b:17.7
occ:0.73
 O A:HOH676 2.3 22.5 1.0
O A:HOH755 2.3 34.4 1.0
O A:SER7 2.3 19.4 1.0
O A:HOH570 2.4 28.2 1.0
O A:TYR9 2.4 13.6 1.0
OE1 A:GLU14 2.5 15.1 1.0
OE2 A:GLU14 2.8 21.1 1.0
CD A:GLU14 3.0 16.4 1.0
C A:SER7 3.5 17.1 1.0
C A:TYR9 3.6 12.2 1.0
CA A:SER7 4.2 18.0 1.0
O A:HOH662 4.3 27.9 0.9
CA A:HIS10 4.3 11.1 1.0
N A:HIS10 4.4 11.1 1.0
N A:TYR9 4.4 12.4 1.0
CG A:GLU14 4.4 14.3 1.0
C A:GLY8 4.4 13.7 1.0
N A:GLY8 4.5 16.4 1.0
O A:HOH678 4.6 32.0 0.8
CA A:TYR9 4.6 11.1 1.0
O A:HOH616 4.6 19.5 0.7
N A:ASN11 4.7 11.8 1.0
CB A:SER7 4.7 21.5 1.0
CA A:GLY8 4.7 15.3 1.0
O A:HOH775 4.7 40.1 1.0
O A:GLY8 4.7 15.7 1.0
CB A:GLU14 4.9 13.1 1.0
C A:HIS10 5.0 11.6 1.0

Calcium binding site 2 out of 5 in 4iav

Go back to Calcium Binding Sites List in 4iav
Calcium binding site 2 out of 5 in the G215S, A251G, T257A, D260G, T262D Mutant of Carboxypeptidase T From Thermoactinomyces Vulgaris with N-Sulfamoyl-L-Phenylalanine


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of G215S, A251G, T257A, D260G, T262D Mutant of Carboxypeptidase T From Thermoactinomyces Vulgaris with N-Sulfamoyl-L-Phenylalanine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca405

b:16.5
occ:0.86
 OE1 A:GLU57 2.3 25.7 1.0
OG A:SER50 2.3 15.7 1.0
O A:ASP51 2.3 18.8 1.0
OD1 A:ASP51 2.4 22.9 1.0
O A:HOH587 2.4 18.2 1.0
OE1 A:GLU59 2.4 23.6 1.0
CD A:GLU59 3.2 27.4 1.0
OE2 A:GLU59 3.2 37.7 1.0
C A:ASP51 3.4 18.7 1.0
CB A:SER50 3.4 14.6 1.0
CD A:GLU57 3.5 27.6 1.0
CG A:ASP51 3.5 23.6 1.0
N A:ASP51 3.7 15.1 1.0
CA A:CA420 3.9 32.9 1.0
CA A:ASP51 4.0 17.7 1.0
CG A:GLU57 4.0 24.1 1.0
C A:SER50 4.2 13.5 1.0
CB A:GLU57 4.3 21.4 1.0
CG A:GLU104 4.3 15.5 1.0
CA A:SER50 4.3 13.2 1.0
CB A:ASP51 4.4 19.9 1.0
OD2 A:ASP51 4.4 26.7 1.0
OE2 A:GLU104 4.4 18.9 1.0
O A:ASN52 4.4 19.6 1.0
O A:ARG103 4.4 14.2 1.0
CB A:ASN52 4.4 24.1 1.0
N A:ASN52 4.5 19.6 1.0
OE2 A:GLU57 4.5 34.8 1.0
CG A:GLU59 4.6 27.2 1.0
C A:ASN52 4.6 19.9 1.0
O A:VAL100 4.6 14.7 1.0
CA A:ASN52 4.8 22.7 1.0
CD A:GLU104 4.8 18.9 1.0
OD1 A:ASN52 4.8 32.3 1.0
O A:SER50 4.9 15.0 1.0
O A:ASN101 4.9 18.3 1.0
O A:HOH756 4.9 50.7 1.0

Calcium binding site 3 out of 5 in 4iav

Go back to Calcium Binding Sites List in 4iav
Calcium binding site 3 out of 5 in the G215S, A251G, T257A, D260G, T262D Mutant of Carboxypeptidase T From Thermoactinomyces Vulgaris with N-Sulfamoyl-L-Phenylalanine


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of G215S, A251G, T257A, D260G, T262D Mutant of Carboxypeptidase T From Thermoactinomyces Vulgaris with N-Sulfamoyl-L-Phenylalanine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca406

b:19.9
occ:1.00
 O A:HOH685 2.2 20.2 1.0
OE1 A:GLU104 2.2 19.4 1.0
OD1 A:ASP56 2.3 20.6 1.0
OE2 A:GLU61 2.4 16.2 1.0
O A:GLU57 2.4 21.2 1.0
O A:HOH686 2.4 17.4 0.7
CD A:GLU104 3.3 18.9 1.0
CG A:ASP56 3.4 22.8 1.0
CD A:GLU61 3.5 14.3 1.0
C A:GLU57 3.7 19.3 1.0
OE2 A:GLU104 3.8 18.9 1.0
NH2 A:ARG189 3.8 21.4 1.0
CG A:GLU61 3.9 12.6 1.0
O A:GLU59 3.9 16.9 1.0
O A:HOH687 3.9 25.7 0.7
OD2 A:ASP56 3.9 23.4 1.0
N A:GLU57 4.0 20.7 1.0
N A:GLU59 4.4 21.0 1.0
C A:ASP56 4.4 21.4 1.0
CA A:GLU57 4.5 17.2 1.0
OE1 A:GLU61 4.5 14.3 1.0
OE1 A:GLN196 4.6 19.2 1.0
CG A:GLU104 4.6 15.5 1.0
O A:HOH697 4.6 30.6 0.9
N A:ASN58 4.6 22.4 1.0
CB A:ASP56 4.6 22.7 1.0
CA A:ASP56 4.7 21.1 1.0
CG A:GLN196 4.7 15.1 1.0
CA A:ASN58 4.7 23.6 1.0
CB A:GLN196 4.8 12.9 1.0
CB A:GLU104 4.9 13.9 1.0
C A:GLU59 4.9 15.8 1.0

Calcium binding site 4 out of 5 in 4iav

Go back to Calcium Binding Sites List in 4iav
Calcium binding site 4 out of 5 in the G215S, A251G, T257A, D260G, T262D Mutant of Carboxypeptidase T From Thermoactinomyces Vulgaris with N-Sulfamoyl-L-Phenylalanine


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of G215S, A251G, T257A, D260G, T262D Mutant of Carboxypeptidase T From Thermoactinomyces Vulgaris with N-Sulfamoyl-L-Phenylalanine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca417

b:31.5
occ:1.00
 O A:TYR5 2.3 21.8 1.0
O A:HOH591 2.4 23.4 0.9
O A:HOH753 2.4 36.4 1.0
OD1 A:ASP291 2.4 18.6 1.0
OE2 A:GLU292 2.5 30.9 1.0
OE1 A:GLU292 2.6 19.8 1.0
O A:HOH754 2.6 46.5 1.0
O A:HOH762 2.8 38.0 0.8
CD A:GLU292 2.9 22.8 1.0
CG A:ASP291 3.4 15.9 1.0
C A:TYR5 3.5 18.9 1.0
OD2 A:ASP291 3.8 15.9 1.0
CA A:TYR5 4.3 21.5 1.0
OD1 A:ASP6 4.3 17.8 1.0
CG A:GLU292 4.4 19.9 1.0
N A:ASP291 4.4 12.7 1.0
CB A:TYR5 4.5 23.6 1.0
N A:ASP6 4.5 17.6 1.0
O A:HOH744 4.5 29.5 0.7
N A:GLU292 4.6 12.0 1.0
CB A:ASP291 4.7 13.6 1.0
CA A:ASP6 4.7 16.0 1.0
CA A:ASP291 4.9 12.6 1.0

Calcium binding site 5 out of 5 in 4iav

Go back to Calcium Binding Sites List in 4iav
Calcium binding site 5 out of 5 in the G215S, A251G, T257A, D260G, T262D Mutant of Carboxypeptidase T From Thermoactinomyces Vulgaris with N-Sulfamoyl-L-Phenylalanine


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of G215S, A251G, T257A, D260G, T262D Mutant of Carboxypeptidase T From Thermoactinomyces Vulgaris with N-Sulfamoyl-L-Phenylalanine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca420

b:32.9
occ:1.00
 OE2 A:GLU59 2.3 37.7 1.0
O A:ASN101 2.4 18.3 1.0
O A:HOH756 2.4 50.7 1.0
O A:HOH757 2.6 49.0 1.0
OD2 A:ASP51 2.6 26.7 1.0
OD1 A:ASP51 2.7 22.9 1.0
CG A:ASP51 3.0 23.6 1.0
CD A:GLU59 3.5 27.4 1.0
C A:ASN101 3.5 15.1 1.0
OE1 A:GLU57 3.5 25.7 1.0
CA A:CA405 3.9 16.5 0.9
OE1 A:GLU59 4.1 23.6 1.0
CD A:GLU57 4.2 27.6 1.0
CA A:ASN101 4.3 16.1 1.0
OE2 A:GLU57 4.3 34.8 1.0
O A:HOH716 4.4 27.9 0.6
N A:ASN102 4.4 14.8 1.0
OD1 A:ASN52 4.4 32.3 1.0
CG A:GLU59 4.4 27.2 1.0
CA A:ASN102 4.5 14.6 1.0
CB A:ASP51 4.5 19.9 1.0
OD1 A:ASN102 4.8 20.8 1.0
CB A:ASN101 4.8 17.6 1.0

Reference:

V.I.Timofeev, S.A.Kuznetsov, V.K.Akparov, I.P.Kuranova. G215S, A251G, T257A, D260G, T262D Mutant of Carboxypeptidase T From Thermoactinomyces Vulgaris with N-Sulfamoyl-L-Phenylalanine To Be Published.
Page generated: Sun Jul 14 08:07:03 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy