Atomistry » Calcium » PDB 4iai-4iun » 4ihj
Atomistry »
  Calcium »
    PDB 4iai-4iun »
      4ihj »

Calcium in PDB 4ihj: Crystal Structure of Tubulin-Stathmin-Ttl-Adp Complex

Protein crystallography data

The structure of Crystal Structure of Tubulin-Stathmin-Ttl-Adp Complex, PDB code: 4ihj was solved by A.E.Prota, M.M.Magiera, M.Kuijpers, K.Bargsten, D.Frey, M.Wieser, R.Jaussi, C.C.Hoogenraad, R.A.Kammerer, C.Janke, M.O.Steinmetz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 72.10 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 104.520, 157.310, 180.990, 90.00, 90.00, 90.00
R / Rfree (%) 16.8 / 21.7

Other elements in 4ihj:

The structure of Crystal Structure of Tubulin-Stathmin-Ttl-Adp Complex also contains other interesting chemical elements:

Magnesium (Mg) 7 atoms
Chlorine (Cl) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Tubulin-Stathmin-Ttl-Adp Complex (pdb code 4ihj). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Crystal Structure of Tubulin-Stathmin-Ttl-Adp Complex, PDB code: 4ihj:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in 4ihj

Go back to Calcium Binding Sites List in 4ihj
Calcium binding site 1 out of 4 in the Crystal Structure of Tubulin-Stathmin-Ttl-Adp Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Tubulin-Stathmin-Ttl-Adp Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca503

b:59.8
occ:1.00
O A:THR41 2.4 66.3 1.0
OG1 A:THR41 2.5 49.9 1.0
OD2 A:ASP39 2.6 55.4 1.0
O A:GLY44 2.6 55.2 1.0
OE1 A:GLU55 2.6 53.6 1.0
O A:HOH702 2.6 67.9 1.0
OD1 A:ASP39 2.7 55.0 1.0
OE2 A:GLU55 2.7 49.4 1.0
CG A:ASP39 3.0 89.9 1.0
CD A:GLU55 3.0 72.4 1.0
C A:THR41 3.5 96.3 1.0
HA3 A:GLY45 3.5 63.4 1.0
CB A:THR41 3.6 53.3 1.0
HZ A:PHE49 3.6 77.0 1.0
H A:GLY44 3.7 82.7 1.0
C A:GLY44 3.7 79.9 1.0
H A:THR41 3.7 70.0 1.0
HB A:THR41 3.7 63.9 1.0
CA A:THR41 3.9 72.5 1.0
HD22 A:ASN50 4.2 51.2 1.0
HE2 A:HIS61 4.2 70.9 1.0
N A:THR41 4.2 58.3 1.0
O A:HOH714 4.3 57.9 1.0
HE1 A:PHE49 4.3 64.2 1.0
CA A:GLY45 4.3 52.8 1.0
N A:GLY44 4.4 69.0 1.0
N A:GLY45 4.4 0.6 1.0
CZ A:PHE49 4.4 64.2 1.0
CB A:ASP39 4.5 40.2 1.0
H A:GLY43 4.5 82.8 1.0
CG A:GLU55 4.5 52.5 1.0
OD1 A:ASP47 4.6 50.9 1.0
N A:ILE42 4.6 67.6 1.0
CA A:GLY44 4.6 62.7 1.0
HA A:ILE42 4.7 85.0 1.0
HA2 A:GLY45 4.8 63.4 1.0
OD1 A:ASN50 4.8 56.6 1.0
HB3 A:ASP39 4.8 48.2 1.0
CE1 A:PHE49 4.8 53.5 1.0
HG2 A:GLU55 4.8 63.0 1.0
HA A:THR41 4.9 87.0 1.0
N A:GLY43 4.9 69.0 1.0
HB2 A:ASP39 4.9 48.2 1.0
CG2 A:THR41 4.9 47.4 1.0
NE2 A:HIS61 4.9 59.1 1.0
HG3 A:GLU55 5.0 63.0 1.0
ND2 A:ASN50 5.0 42.7 1.0

Calcium binding site 2 out of 4 in 4ihj

Go back to Calcium Binding Sites List in 4ihj
Calcium binding site 2 out of 4 in the Crystal Structure of Tubulin-Stathmin-Ttl-Adp Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Tubulin-Stathmin-Ttl-Adp Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca505

b:0.4
occ:1.00
O A:HOH710 2.9 63.9 1.0
O A:HOH679 3.1 61.4 1.0
OD2 E:ASP44 3.6 60.3 1.0
HZ1 A:LYS166 3.8 48.3 1.0
HA A:HIS197 3.8 48.2 1.0
HG A:SER158 3.8 49.0 1.0
HB3 A:SER158 3.9 49.9 1.0
OG A:SER158 4.0 40.9 1.0
HZ3 A:LYS166 4.1 48.3 1.0
O A:GLU196 4.2 47.0 1.0
NZ A:LYS166 4.4 40.2 1.0
CB A:SER158 4.5 41.6 1.0
HD1 A:HIS197 4.6 46.2 1.0
CG E:ASP44 4.7 0.3 1.0
O A:GLY162 4.7 47.5 1.0
HZ2 A:LYS166 4.7 48.3 1.0
CA A:HIS197 4.7 40.1 1.0
HA A:SER158 4.7 50.9 1.0
O A:HIS197 4.8 38.2 1.0
OD1 E:ASP44 5.0 67.2 1.0
C A:HIS197 5.0 44.1 1.0

Calcium binding site 3 out of 4 in 4ihj

Go back to Calcium Binding Sites List in 4ihj
Calcium binding site 3 out of 4 in the Crystal Structure of Tubulin-Stathmin-Ttl-Adp Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Tubulin-Stathmin-Ttl-Adp Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca503

b:95.7
occ:1.00
OE2 B:GLU113 2.7 59.3 1.0
O B:HOH698 2.8 58.2 1.0
O B:HOH670 2.8 58.9 1.0
O B:HOH701 2.9 73.9 1.0
OE1 B:GLU113 3.0 70.6 1.0
CD B:GLU113 3.2 57.5 1.0
CG B:GLU113 4.7 47.1 1.0
OE1 B:GLU110 4.9 45.0 1.0

Calcium binding site 4 out of 4 in 4ihj

Go back to Calcium Binding Sites List in 4ihj
Calcium binding site 4 out of 4 in the Crystal Structure of Tubulin-Stathmin-Ttl-Adp Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of Tubulin-Stathmin-Ttl-Adp Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca503

b:44.2
occ:1.00
O C:HOH780 2.4 31.3 1.0
O C:THR41 2.4 50.1 1.0
OE2 C:GLU55 2.5 41.0 1.0
O C:GLY44 2.5 42.1 1.0
OG1 C:THR41 2.6 37.7 1.0
OD1 C:ASP39 2.6 43.8 1.0
OD2 C:ASP39 2.6 44.4 1.0
OE1 C:GLU55 2.7 40.1 1.0
CD C:GLU55 2.9 46.7 1.0
CG C:ASP39 3.0 35.1 1.0
HA3 C:GLY45 3.3 65.7 1.0
C C:THR41 3.5 52.0 1.0
C C:GLY44 3.5 81.0 1.0
H C:THR41 3.6 51.1 1.0
CB C:THR41 3.6 54.6 1.0
HZ C:PHE49 3.7 37.3 1.0
HB C:THR41 3.8 65.5 1.0
H C:GLY44 3.8 55.9 1.0
CA C:THR41 3.9 44.5 1.0
HE2 C:HIS61 3.9 33.0 1.0
CA C:GLY45 4.1 54.8 1.0
N C:THR41 4.1 42.6 1.0
N C:GLY45 4.1 61.1 1.0
HD22 C:ASN50 4.2 38.4 1.0
HE1 C:PHE49 4.2 33.6 1.0
OD1 C:ASP47 4.3 50.4 1.0
O C:HOH614 4.4 43.6 1.0
CG C:GLU55 4.4 32.2 1.0
N C:GLY44 4.4 46.6 1.0
CZ C:PHE49 4.5 31.1 1.0
CB C:ASP39 4.5 40.5 1.0
CA C:GLY44 4.5 63.1 1.0
HA2 C:GLY45 4.5 65.7 1.0
OD1 C:ASN50 4.6 35.5 1.0
N C:ILE42 4.7 55.4 1.0
NE2 C:HIS61 4.7 27.5 1.0
HA C:ILE42 4.7 41.2 1.0
CE1 C:PHE49 4.7 28.0 1.0
HG2 C:GLU55 4.8 38.6 1.0
HG3 C:GLU55 4.8 38.6 1.0
HA2 C:GLY44 4.8 75.8 1.0
HA C:THR41 4.8 53.3 1.0
HB2 C:ASP39 4.9 48.6 1.0
H C:GLY43 4.9 54.5 1.0
H C:GLY45 4.9 73.3 1.0
HB3 C:ASP39 4.9 48.6 1.0
ND2 C:ASN50 4.9 32.0 1.0
CG2 C:THR41 5.0 43.1 1.0

Reference:

A.E.Prota, M.M.Magiera, M.Kuijpers, K.Bargsten, D.Frey, M.Wieser, R.Jaussi, C.C.Hoogenraad, R.A.Kammerer, C.Janke, M.O.Steinmetz. Structural Basis of Tubulin Tyrosination By Tubulin Tyrosine Ligase. J.Cell Biol. V. 200 259 2013.
ISSN: ISSN 0021-9525
PubMed: 23358242
DOI: 10.1083/JCB.201211017
Page generated: Sun Jul 14 08:09:04 2024

Last articles

Zn in 1MC5
Zn in 1MFM
Zn in 1MA0
Zn in 1MED
Zn in 1MEA
Zn in 1MBX
Zn in 1MA3
Zn in 1M9O
Zn in 1M9R
Zn in 1M9Q
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy