Calcium »
PDB 4ixo-4jml »
4ixr »
Calcium in PDB 4ixr: Rt Fs X-Ray Diffraction of Photosystem II, First Illuminated State
Enzymatic activity of Rt Fs X-Ray Diffraction of Photosystem II, First Illuminated State
All present enzymatic activity of Rt Fs X-Ray Diffraction of Photosystem II, First Illuminated State:
1.10.3.9;
1.10.3.9;
Protein crystallography data
The structure of Rt Fs X-Ray Diffraction of Photosystem II, First Illuminated State, PDB code: 4ixr
was solved by
J.Kern,
R.Alonso-Mori,
R.Tran,
J.Hattne,
R.J.Gildea,
N.Echols,
C.Gloeckner,
J.Hellmich,
H.Laksmono,
R.G.Sierra,
B.Lassalle-Kaiser,
S.Koroidov,
A.Lampe,
G.Han,
S.Gul,
D.Difiore,
D.Milathianaki,
A.R.Fry,
A.Miahnahri,
D.W.Schafer,
M.Messerschmidt,
M.M.Seibert,
J.E.Koglin,
D.Sokaras,
T.-C.Weng,
J.Sellberg,
M.J.Latimer,
R.W.Grosse-Kunstleve,
P.H.Zwart,
W.E.White,
P.Glatzel,
P.D.Adams,
M.J.Bogan,
G.J.Williams,
S.Boutet,
J.Messinger,
A.Zouni,
N.K.Sauter,
V.K.Yachandra,
U.Bergmann,
J.Yano,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 82.97 / 5.90 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 131.976, 227.568, 306.994, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 28.5 / 31.3 |
Other elements in 4ixr:
The structure of Rt Fs X-Ray Diffraction of Photosystem II, First Illuminated State also contains other interesting chemical elements:
| Magnesium | (Mg) | 70 atoms |
| Manganese | (Mn) | 8 atoms |
| Iron | (Fe) | 6 atoms |
| Chlorine | (Cl) | 2 atoms |
Calcium Binding Sites:
The binding sites of Calcium atom in the Rt Fs X-Ray Diffraction of Photosystem II, First Illuminated State
(pdb code 4ixr). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the Rt Fs X-Ray Diffraction of Photosystem II, First Illuminated State, PDB code: 4ixr:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6;
In total 6 binding sites of Calcium where determined in the Rt Fs X-Ray Diffraction of Photosystem II, First Illuminated State, PDB code: 4ixr:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6;
Calcium binding site 1 out of 6 in 4ixr
Go back to
Calcium Binding Sites List in 4ixr
Calcium binding site 1 out
of 6 in the Rt Fs X-Ray Diffraction of Photosystem II, First Illuminated State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Rt Fs X-Ray Diffraction of Photosystem II, First Illuminated State within 5.0Å range:
|
Calcium binding site 2 out of 6 in 4ixr
Go back to
Calcium Binding Sites List in 4ixr
Calcium binding site 2 out
of 6 in the Rt Fs X-Ray Diffraction of Photosystem II, First Illuminated State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Rt Fs X-Ray Diffraction of Photosystem II, First Illuminated State within 5.0Å range:
|
Calcium binding site 3 out of 6 in 4ixr
Go back to
Calcium Binding Sites List in 4ixr
Calcium binding site 3 out
of 6 in the Rt Fs X-Ray Diffraction of Photosystem II, First Illuminated State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Rt Fs X-Ray Diffraction of Photosystem II, First Illuminated State within 5.0Å range:
|
Calcium binding site 4 out of 6 in 4ixr
Go back to
Calcium Binding Sites List in 4ixr
Calcium binding site 4 out
of 6 in the Rt Fs X-Ray Diffraction of Photosystem II, First Illuminated State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Rt Fs X-Ray Diffraction of Photosystem II, First Illuminated State within 5.0Å range:
|
Calcium binding site 5 out of 6 in 4ixr
Go back to
Calcium Binding Sites List in 4ixr
Calcium binding site 5 out
of 6 in the Rt Fs X-Ray Diffraction of Photosystem II, First Illuminated State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Rt Fs X-Ray Diffraction of Photosystem II, First Illuminated State within 5.0Å range:
|
Calcium binding site 6 out of 6 in 4ixr
Go back to
Calcium Binding Sites List in 4ixr
Calcium binding site 6 out
of 6 in the Rt Fs X-Ray Diffraction of Photosystem II, First Illuminated State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Rt Fs X-Ray Diffraction of Photosystem II, First Illuminated State within 5.0Å range:
|
Reference:
J.Kern,
R.Alonso-Mori,
R.Tran,
J.Hattne,
R.J.Gildea,
N.Echols,
C.Glockner,
J.Hellmich,
H.Laksmono,
R.G.Sierra,
B.Lassalle-Kaiser,
S.Koroidov,
A.Lampe,
G.Han,
S.Gul,
D.Difiore,
D.Milathianaki,
A.R.Fry,
A.Miahnahri,
D.W.Schafer,
M.Messerschmidt,
M.M.Seibert,
J.E.Koglin,
D.Sokaras,
T.C.Weng,
J.Sellberg,
M.J.Latimer,
R.W.Grosse-Kunstleve,
P.H.Zwart,
W.E.White,
P.Glatzel,
P.D.Adams,
M.J.Bogan,
G.J.Williams,
S.Boutet,
J.Messinger,
A.Zouni,
N.K.Sauter,
V.K.Yachandra,
U.Bergmann,
J.Yano.
Simultaneous Femtosecond X-Ray Spectroscopy and Diffraction of Photosystem II at Room Temperature. Science V. 340 491 2013.
ISSN: ISSN 0036-8075
PubMed: 23413188
DOI: 10.1126/SCIENCE.1234273
Page generated: Sun Jul 14 08:22:32 2024
ISSN: ISSN 0036-8075
PubMed: 23413188
DOI: 10.1126/SCIENCE.1234273
Last articles
Zn in 9JYWZn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
