Calcium in PDB 4jd2: Crystal Structure of Bos Taurus ARP2/3 Complex Binding with Mus Musculus Gmf

The structure of Crystal Structure of Bos Taurus ARP2/3 Complex Binding with Mus Musculus Gmf, PDB code: 4jd2 was solved by B.J.Nolen, Q.Luan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.82 / 3.08
Space group	P 65
Cell size a, b, c (Å), α, β, γ (°)	231.538, 231.538, 109.743, 90.00, 90.00, 120.00
R / Rfree (%)	20.9 / 24.8

The binding sites of Calcium atom in the Crystal Structure of Bos Taurus ARP2/3 Complex Binding with Mus Musculus Gmf (pdb code 4jd2). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Bos Taurus ARP2/3 Complex Binding with Mus Musculus Gmf, PDB code: 4jd2:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of Bos Taurus ARP2/3 Complex Binding with Mus Musculus Gmf


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Bos Taurus ARP2/3 Complex Binding with Mus Musculus Gmf within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca501 b:64.6 occ:1.00 O1B A:ATP502 2.6 70.5 1.0 O2G A:ATP502 2.6 67.0 1.0 PG A:ATP502 3.8 62.4 1.0 OD1 A:ASP11 3.9 82.8 1.0 O3G A:ATP502 3.9 65.5 1.0 PB A:ATP502 4.0 66.4 1.0 NZ A:LYS18 4.0 70.0 1.0 OD2 A:ASP169 4.0 0.7 1.0 OD2 A:ASP11 4.0 79.5 1.0 OD1 A:ASP169 4.1 0.4 1.0 O3B A:ATP502 4.3 64.4 1.0 CG A:ASP11 4.4 78.4 1.0 OE1 A:GLN144 4.5 70.7 1.0 O1A A:ATP502 4.5 66.4 1.0 CG A:ASP169 4.5 98.8 1.0 CA A:GLY13 4.5 72.0 1.0 O3A A:ATP502 4.6 67.2 1.0 CD A:GLN144 4.7 68.5 1.0 NE2 A:GLN144 4.8 68.3 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of Bos Taurus ARP2/3 Complex Binding with Mus Musculus Gmf


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Bos Taurus ARP2/3 Complex Binding with Mus Musculus Gmf within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca501 b:77.7 occ:1.00 O1B B:ATP502 2.6 80.2 1.0 O2G B:ATP502 2.7 90.4 1.0 O3G B:ATP502 3.2 95.3 1.0 PG B:ATP502 3.5 91.0 1.0 OD2 B:ASP12 3.8 97.7 1.0 PB B:ATP502 3.9 78.6 1.0 NZ B:LYS19 4.0 86.5 1.0 OD1 B:ASP12 4.0 99.1 1.0 O1A B:ATP502 4.2 71.8 1.0 OD1 B:ASP158 4.2 96.5 1.0 O3B B:ATP502 4.2 84.6 1.0 OE1 B:GLN141 4.3 87.8 1.0 CG B:ASP12 4.3 97.3 1.0 NE2 B:GLN141 4.4 86.7 1.0 O3A B:ATP502 4.6 75.3 1.0 CA B:GLY14 4.6 95.3 1.0 OD2 B:ASP158 4.6 91.7 1.0 CD B:GLN141 4.7 86.3 1.0 CG2 B:VAL354 4.7 0.4 1.0 CG B:ASP158 4.9 91.1 1.0 PA B:ATP502 4.9 71.9 1.0 O1G B:ATP502 4.9 85.6 1.0

Q.Luan, B.J.Nolen. Structural Basis For Regulation of ARP2/3 Complex By Gmf. Nat.Struct.Mol.Biol. V. 20 1062 2013.
ISSN: ISSN 1545-9993
PubMed: 23893131
DOI: 10.1038/NSMB.2628