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Calcium in PDB 4je0: Structures of Sdrd From Staphylococcus Aureus Reveal the Molecular Mechanism of How the Cell Surface Receptors Recognize Their Ligands

Protein crystallography data

The structure of Structures of Sdrd From Staphylococcus Aureus Reveal the Molecular Mechanism of How the Cell Surface Receptors Recognize Their Ligands, PDB code: 4je0 was solved by X.Wang, J.Ge, M.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.44 / 1.70
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 133.308, 58.363, 112.362, 90.00, 111.14, 90.00
R / Rfree (%) 20.9 / 24.6

Calcium Binding Sites:

The binding sites of Calcium atom in the Structures of Sdrd From Staphylococcus Aureus Reveal the Molecular Mechanism of How the Cell Surface Receptors Recognize Their Ligands (pdb code 4je0). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structures of Sdrd From Staphylococcus Aureus Reveal the Molecular Mechanism of How the Cell Surface Receptors Recognize Their Ligands, PDB code: 4je0:

Calcium binding site 1 out of 1 in 4je0

Go back to Calcium Binding Sites List in 4je0
Calcium binding site 1 out of 1 in the Structures of Sdrd From Staphylococcus Aureus Reveal the Molecular Mechanism of How the Cell Surface Receptors Recognize Their Ligands


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structures of Sdrd From Staphylococcus Aureus Reveal the Molecular Mechanism of How the Cell Surface Receptors Recognize Their Ligands within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca401

b:51.5
occ:1.00
OD1 A:ASP17 2.2 66.8 1.0
OD1 A:ASP19 2.3 67.6 1.0
O A:LYS23 2.4 61.9 1.0
OD1 A:ASP29 2.4 55.7 1.0
OD1 A:ASN21 2.5 73.8 1.0
OD2 A:ASP29 2.6 54.7 1.0
CG A:ASP29 2.8 54.3 1.0
O A:HOH593 2.9 79.3 1.0
CG A:ASP19 3.2 68.7 1.0
CG A:ASN21 3.3 72.7 1.0
OD2 A:ASP19 3.4 68.0 1.0
ND2 A:ASN21 3.5 72.3 1.0
CG A:ASP17 3.5 70.5 1.0
C A:LYS23 3.6 64.4 1.0
OD2 A:ASP17 4.3 70.7 1.0
CA A:ASP17 4.3 65.7 1.0
CB A:ASP29 4.3 50.1 1.0
N A:ASP19 4.4 71.2 1.0
CB A:ASP17 4.4 67.2 1.0
N A:ALA18 4.5 62.5 1.0
CA A:ILE24 4.5 59.0 1.0
N A:ILE24 4.5 63.2 1.0
N A:LYS23 4.5 71.2 1.0
CB A:ASP19 4.5 71.2 1.0
C A:ASP17 4.6 63.0 1.0
CA A:LYS23 4.6 67.1 1.0
N A:VAL25 4.6 52.9 1.0
CB A:GLN28 4.7 62.7 1.0
CD1 A:ILE24 4.7 57.8 1.0
CB A:ASN21 4.8 74.7 1.0
N A:ASN21 4.8 79.0 1.0
N A:LYS20 4.9 76.8 1.0
CA A:ASP19 4.9 73.1 1.0

Reference:

X.Wang, J.Ge, B.Liu, Y.Hu, M.Yang. Structures of Sdrd From Staphylococcus Aureus Reveal the Molecular Mechanism of How the Cell Surface Receptors Recognize Their Ligands Protein Cell V. 4 277 2013.
ISSN: ISSN 1674-800X
PubMed: 23549613
DOI: 10.1007/S13238-013-3009-X
Page generated: Sun Jul 14 08:29:51 2024

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