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Calcium in PDB 4jjj: The Structure of T. Fusca GH48 D224N Mutant

Enzymatic activity of The Structure of T. Fusca GH48 D224N Mutant

All present enzymatic activity of The Structure of T. Fusca GH48 D224N Mutant:
3.2.1.91;

Protein crystallography data

The structure of The Structure of T. Fusca GH48 D224N Mutant, PDB code: 4jjj was solved by P.M.Alahuhta, V.V.Lunin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 1.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 56.458, 88.494, 66.753, 90.00, 113.72, 90.00
R / Rfree (%) 12.1 / 16.4

Other elements in 4jjj:

The structure of The Structure of T. Fusca GH48 D224N Mutant also contains other interesting chemical elements:

Zinc (Zn) 22 atoms
Iron (Fe) 5 atoms
Sodium (Na) 3 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the The Structure of T. Fusca GH48 D224N Mutant (pdb code 4jjj). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the The Structure of T. Fusca GH48 D224N Mutant, PDB code: 4jjj:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in 4jjj

Go back to Calcium Binding Sites List in 4jjj
Calcium binding site 1 out of 4 in the The Structure of T. Fusca GH48 D224N Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Structure of T. Fusca GH48 D224N Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca704

b:8.0
occ:1.00
OD1 A:ASP408 2.3 7.0 1.0
O A:HOH826 2.3 9.0 1.0
OE1 A:GLU560 2.4 9.7 1.0
O A:ARG180 2.4 8.3 1.0
OE1 A:GLU185 2.4 9.4 1.0
O A:HOH819 2.5 8.8 1.0
OE2 A:GLU185 2.6 8.2 1.0
CD A:GLU185 2.9 9.7 1.0
CD A:GLU560 3.4 9.7 1.0
CG A:ASP408 3.5 7.2 1.0
C A:ARG180 3.5 7.1 1.0
OE2 A:GLU560 3.8 11.3 1.0
NH2 A:ARG551 3.8 10.2 1.0
CB A:ASP408 4.0 6.3 1.0
CA A:ARG180 4.2 7.4 1.0
O A:HOH962 4.3 9.9 1.0
CB A:ARG180 4.3 9.1 1.0
N A:SER182 4.3 6.2 1.0
CG A:GLU185 4.3 8.2 1.0
O A:SER559 4.4 11.1 1.0
OD2 A:ASP408 4.5 7.1 1.0
O A:HOH1424 4.5 37.0 1.0
N A:GLU181 4.5 6.3 1.0
CA A:GLU181 4.6 6.3 1.0
CG A:GLU560 4.7 9.8 1.0
CA A:GLU560 4.7 9.8 1.0
CB A:SER182 4.7 5.8 1.0
OD1 A:ASN111 4.8 8.3 1.0
CB A:GLU560 4.8 9.7 1.0
O A:HOH1068 4.8 14.1 1.0
OG A:SER182 4.8 7.1 1.0
NE A:ARG180 4.9 11.3 1.0
C A:GLU181 5.0 6.2 1.0

Calcium binding site 2 out of 4 in 4jjj

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Calcium binding site 2 out of 4 in the The Structure of T. Fusca GH48 D224N Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The Structure of T. Fusca GH48 D224N Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca705

b:15.4
occ:1.00
OD1 A:ASP553 2.0 17.7 1.0
O A:HOH1292 2.1 22.7 1.0
O A:ASP550 2.2 13.1 1.0
O A:HOH1158 2.2 21.5 1.0
OD1 A:ASP554 2.3 16.8 1.0
O A:HOH1804 2.3 25.0 1.0
CG A:ASP553 3.2 19.8 1.0
CG A:ASP554 3.3 15.3 1.0
O A:HOH988 3.3 29.1 1.0
C A:ASP550 3.4 12.2 1.0
OD2 A:ASP553 3.6 23.2 1.0
OD2 A:ASP554 3.7 14.3 1.0
O A:HOH865 3.8 23.2 1.0
CA A:ASP550 4.0 11.5 1.0
O A:HOH1844 4.2 37.8 1.0
O A:HOH1845 4.3 42.5 1.0
CB A:ASP550 4.3 15.1 1.0
O A:HOH1484 4.3 31.6 1.0
C A:ASP553 4.4 14.6 1.0
N A:ARG551 4.4 9.8 1.0
CB A:ASP553 4.4 16.6 1.0
N A:ASP554 4.4 11.8 1.0
N A:ASP553 4.5 11.6 1.0
CA A:ARG551 4.5 9.1 1.0
CB A:ASP554 4.5 12.8 1.0
CA A:ASP553 4.6 13.4 1.0
CA A:ASP554 4.7 13.1 1.0
O A:ASP553 4.7 13.2 1.0
C A:ARG551 4.8 9.2 1.0
N A:LEU552 5.0 10.1 0.7

Calcium binding site 3 out of 4 in 4jjj

Go back to Calcium Binding Sites List in 4jjj
Calcium binding site 3 out of 4 in the The Structure of T. Fusca GH48 D224N Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of The Structure of T. Fusca GH48 D224N Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca706

b:31.0
occ:1.00
O A:HOH809 2.2 32.3 0.5
OD2 A:ASP442 2.2 12.4 1.0
O A:HOH809 2.3 27.4 0.5
O A:HOH1020 2.4 17.8 1.0
O A:HOH1334 2.4 19.4 1.0
OE2 A:GLU438 2.6 27.1 1.0
CG A:ASP442 3.1 10.2 1.0
OD1 A:ASP442 3.2 11.6 1.0
CD A:GLU438 3.4 18.4 1.0
CG A:GLU438 3.6 11.5 1.0
O A:HOH1116 4.0 21.1 1.0
O A:HOH1562 4.1 14.9 0.5
O A:HOH1833 4.2 32.9 1.0
OE1 A:GLU438 4.3 19.7 1.0
CB A:ASP442 4.4 9.5 1.0
OH A:TYR429 5.0 11.2 1.0

Calcium binding site 4 out of 4 in 4jjj

Go back to Calcium Binding Sites List in 4jjj
Calcium binding site 4 out of 4 in the The Structure of T. Fusca GH48 D224N Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of The Structure of T. Fusca GH48 D224N Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca707

b:21.4
occ:0.50
O A:HOH1376 2.1 27.1 1.0
O A:CYS161 2.2 13.7 0.5
O A:HOH1678 2.2 18.7 0.5
OD2 A:ASP194 2.4 16.8 1.0
O A:HOH1409 2.4 27.4 0.5
O A:HOH978 2.4 18.6 1.0
O A:CYS161 2.5 13.5 0.5
CG A:ASP194 3.3 16.3 1.0
O A:HOH1767 3.4 30.7 0.5
C A:CYS161 3.5 13.9 0.5
C A:CYS161 3.5 12.8 0.5
OD1 A:ASP194 4.0 14.1 1.0
OG1 A:THR196 4.1 16.4 1.0
CB A:CYS161 4.1 11.6 0.5
N A:ASP163 4.2 12.3 1.0
C A:GLY162 4.3 15.0 1.0
O A:PHE160 4.3 13.5 1.0
O A:HOH1687 4.3 39.8 1.0
N A:GLY162 4.3 13.0 1.0
CB A:ASP194 4.3 14.9 1.0
CA A:GLY162 4.4 14.6 1.0
CB A:CYS161 4.4 16.5 0.5
CA A:CYS161 4.4 11.1 0.5
O A:HOH1119 4.4 30.4 1.0
CA A:CYS161 4.5 14.0 0.5
CB A:ASP163 4.6 12.4 1.0
O A:HOH1638 4.6 33.2 1.0
CA A:ASP163 4.7 12.9 1.0
O A:HOH1676 4.8 42.4 1.0
SG A:CYS161 4.9 25.1 0.5
O A:HOH1232 4.9 34.8 1.0
O A:GLY162 5.0 16.6 1.0

Reference:

M.Kostylev, M.Alahuhta, M.Chen, R.Brunecky, M.E.Himmel, V.V.Lunin, J.Brady, D.B.Wilson. CEL48A From Thermobifida Fusca: Structure and Site Directed Mutagenesis of Key Residues. Biotechnol.Bioeng. V. 111 664 2014.
ISSN: ISSN 0006-3592
PubMed: 24264519
DOI: 10.1002/BIT.25139
Page generated: Sat Dec 12 04:53:17 2020

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