Atomistry » Calcium » PDB 4je0-4jyv » 4jo5
Atomistry »
  Calcium »
    PDB 4je0-4jyv »
      4jo5 »

Calcium in PDB 4jo5: CBM3A-L Domain with Flanking Linkers From Scaffoldin Cipa of Cellulosome of Clostridium Thermocellum

Protein crystallography data

The structure of CBM3A-L Domain with Flanking Linkers From Scaffoldin Cipa of Cellulosome of Clostridium Thermocellum, PDB code: 4jo5 was solved by L.J.W.Shimon, F.Frolow, E.A.Bayer, O.Yaniv, R.Lamed, E.Morag, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.13 / 1.98
Space group P 41 3 2
Cell size a, b, c (Å), α, β, γ (°) 109.005, 109.005, 109.005, 90.00, 90.00, 90.00
R / Rfree (%) 17.2 / 21.5

Other elements in 4jo5:

The structure of CBM3A-L Domain with Flanking Linkers From Scaffoldin Cipa of Cellulosome of Clostridium Thermocellum also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the CBM3A-L Domain with Flanking Linkers From Scaffoldin Cipa of Cellulosome of Clostridium Thermocellum (pdb code 4jo5). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the CBM3A-L Domain with Flanking Linkers From Scaffoldin Cipa of Cellulosome of Clostridium Thermocellum, PDB code: 4jo5:

Calcium binding site 1 out of 1 in 4jo5

Go back to Calcium Binding Sites List in 4jo5
Calcium binding site 1 out of 1 in the CBM3A-L Domain with Flanking Linkers From Scaffoldin Cipa of Cellulosome of Clostridium Thermocellum


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of CBM3A-L Domain with Flanking Linkers From Scaffoldin Cipa of Cellulosome of Clostridium Thermocellum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca201

b:27.8
occ:1.00
OD1 A:ASP143 2.3 25.6 1.0
OD2 A:ASP63 2.4 30.9 1.0
OG1 A:THR61 2.4 27.5 1.0
O A:THR61 2.4 29.2 1.0
O A:THR139 2.4 25.1 1.0
OD1 A:ASN142 2.4 30.6 1.0
O A:HOH310 2.5 23.7 0.9
OD1 A:ASP63 2.7 33.5 1.0
CG A:ASP63 2.9 37.5 1.0
H A:THR61 3.2 32.1 1.0
CG A:ASP143 3.3 26.2 1.0
H A:THR139 3.4 38.2 1.0
C A:THR61 3.4 29.6 1.0
CG A:ASN142 3.5 37.1 1.0
CB A:THR61 3.5 36.5 1.0
OD2 A:ASP143 3.6 24.6 1.0
C A:THR139 3.6 35.3 1.0
HD21 A:ASN142 3.6 47.7 1.0
HB A:THR139 3.7 42.4 1.0
CA A:THR61 3.8 36.8 1.0
N A:THR61 3.8 26.8 1.0
HB A:THR61 3.9 43.7 1.0
ND2 A:ASN142 3.9 39.8 1.0
N A:THR139 4.1 31.8 1.0
O A:ASN142 4.2 32.2 1.0
HA A:GLN140 4.2 27.4 1.0
H A:ASN142 4.2 42.0 1.0
HB3 A:TYR138 4.3 34.8 1.0
CA A:THR139 4.3 35.7 1.0
HB2 A:TYR60 4.3 28.8 1.0
HD2 A:TYR60 4.3 29.7 1.0
CB A:ASP63 4.3 30.6 1.0
C A:ASN142 4.4 33.2 1.0
CB A:THR139 4.4 35.3 1.0
HD1 A:TYR138 4.5 27.3 1.0
N A:VAL62 4.6 33.1 1.0
HB2 A:ASP63 4.6 36.7 1.0
CB A:ASP143 4.7 25.6 1.0
N A:GLN140 4.7 23.5 1.0
CB A:ASN142 4.7 39.7 1.0
HA A:ASP143 4.7 32.3 1.0
HG22 A:THR139 4.7 46.1 1.0
N A:ASP143 4.7 28.6 1.0
HA A:THR61 4.7 44.1 1.0
N A:ASP63 4.8 35.4 1.0
HD22 A:ASN142 4.8 47.7 1.0
CG2 A:THR61 4.8 36.2 1.0
H A:ASP63 4.8 42.5 1.0
CA A:GLN140 4.8 22.8 1.0
HG23 A:THR61 4.8 43.4 1.0
C A:VAL62 4.9 30.9 1.0
HB3 A:ASP63 4.9 36.7 1.0
N A:ASN142 4.9 35.0 1.0
CA A:ASN142 4.9 32.2 1.0
O A:HOH421 4.9 49.8 1.0
HA A:VAL62 4.9 29.2 1.0
CA A:ASP143 4.9 26.9 1.0
HG21 A:THR61 5.0 43.4 1.0
HB2 A:ASN142 5.0 47.6 1.0
HA A:TYR138 5.0 35.8 1.0

Reference:

O.Yaniv, E.Morag, I.Borovok, E.A.Bayer, R.Lamed, F.Frolow, L.J.Shimon. Structure of A Family 3A Carbohydrate-Binding Module From the Cellulosomal Scaffoldin Cipa of Clostridium Thermocellum with Flanking Linkers: Implications For Cellulosome Structure. Acta Crystallogr.,Sect.F V. 69 733 2013.
ISSN: ESSN 1744-3091
PubMed: 23832198
DOI: 10.1107/S174430911301614X
Page generated: Sat Dec 12 04:53:20 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy