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Calcium in PDB 4jrf: Crystal Structure of A Putative Cell Adhesion Protein (BACOVA_01548) From Bacteroides Ovatus Atcc 8483 at 1.98 A Resolution (Psi Community Target, Nakayama)

Protein crystallography data

The structure of Crystal Structure of A Putative Cell Adhesion Protein (BACOVA_01548) From Bacteroides Ovatus Atcc 8483 at 1.98 A Resolution (Psi Community Target, Nakayama), PDB code: 4jrf was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.38 / 1.98
Space group I 4
Cell size a, b, c (Å), α, β, γ (°) 134.022, 134.022, 57.730, 90.00, 90.00, 90.00
R / Rfree (%) 15.6 / 17.8

Other elements in 4jrf:

The structure of Crystal Structure of A Putative Cell Adhesion Protein (BACOVA_01548) From Bacteroides Ovatus Atcc 8483 at 1.98 A Resolution (Psi Community Target, Nakayama) also contains other interesting chemical elements:

Chlorine (Cl) 5 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of A Putative Cell Adhesion Protein (BACOVA_01548) From Bacteroides Ovatus Atcc 8483 at 1.98 A Resolution (Psi Community Target, Nakayama) (pdb code 4jrf). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of A Putative Cell Adhesion Protein (BACOVA_01548) From Bacteroides Ovatus Atcc 8483 at 1.98 A Resolution (Psi Community Target, Nakayama), PDB code: 4jrf:

Calcium binding site 1 out of 1 in 4jrf

Go back to Calcium Binding Sites List in 4jrf
Calcium binding site 1 out of 1 in the Crystal Structure of A Putative Cell Adhesion Protein (BACOVA_01548) From Bacteroides Ovatus Atcc 8483 at 1.98 A Resolution (Psi Community Target, Nakayama)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Putative Cell Adhesion Protein (BACOVA_01548) From Bacteroides Ovatus Atcc 8483 at 1.98 A Resolution (Psi Community Target, Nakayama) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca601

b:22.7
occ:1.00
O A:ASN271 2.3 25.8 1.0
O A:THR310 2.3 23.6 1.0
OD1 A:ASN309 2.4 19.6 1.0
OD1 A:ASN271 2.4 24.6 1.0
OD2 A:ASP269 2.4 23.6 1.0
O A:HOH704 2.4 22.8 1.0
OD1 A:ASP269 2.8 24.5 1.0
CG A:ASP269 2.9 25.1 1.0
C A:ASN271 3.3 27.4 1.0
CG A:ASN271 3.5 36.6 1.0
C A:THR310 3.5 24.6 1.0
CG A:ASN309 3.6 24.6 1.0
N A:THR310 3.6 20.3 1.0
CB A:ASN271 4.0 21.8 1.0
CA A:ASN271 4.0 23.8 1.0
ND2 A:ASN245 4.2 22.2 1.0
C A:ASN309 4.2 23.0 1.0
N A:TYR272 4.2 26.1 1.0
CA A:THR310 4.2 21.9 1.0
N A:ASN271 4.3 24.8 1.0
CA A:ASN309 4.3 19.9 1.0
CZ A:PHE282 4.3 23.2 1.0
CE1 A:PHE282 4.3 24.1 1.0
CG A:MSE311 4.4 32.5 1.0
CB A:ASP269 4.4 23.4 1.0
CA A:TYR272 4.5 24.2 1.0
ND2 A:ASN309 4.5 18.6 1.0
CB A:ASN309 4.5 17.0 1.0
N A:MSE311 4.5 20.5 1.0
SE A:MSE311 4.6 42.6 0.8
ND2 A:ASN271 4.6 23.3 1.0
CA A:MSE311 4.8 21.0 1.0
OE1 A:GLN320 4.8 24.4 1.0
O A:GLN320 4.9 22.4 1.0
OG1 A:THR310 4.9 25.2 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sat Dec 12 04:53:28 2020

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