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Calcium in PDB 4jsd: The X-Ray Crystal Structure of A Thermophilic Cellobiose Binding Protein Bound with Laminaribiose

Protein crystallography data

The structure of The X-Ray Crystal Structure of A Thermophilic Cellobiose Binding Protein Bound with Laminaribiose, PDB code: 4jsd was solved by P.Munshi, M.J.Cuneo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.88 / 2.05
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 56.641, 89.596, 108.245, 90.00, 90.00, 90.00
R / Rfree (%) 18.4 / 20.3

Calcium Binding Sites:

The binding sites of Calcium atom in the The X-Ray Crystal Structure of A Thermophilic Cellobiose Binding Protein Bound with Laminaribiose (pdb code 4jsd). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the The X-Ray Crystal Structure of A Thermophilic Cellobiose Binding Protein Bound with Laminaribiose, PDB code: 4jsd:

Calcium binding site 1 out of 1 in 4jsd

Go back to Calcium Binding Sites List in 4jsd
Calcium binding site 1 out of 1 in the The X-Ray Crystal Structure of A Thermophilic Cellobiose Binding Protein Bound with Laminaribiose


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The X-Ray Crystal Structure of A Thermophilic Cellobiose Binding Protein Bound with Laminaribiose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca603

b:28.6
occ:1.00
O A:ASP33 2.4 27.0 1.0
OE1 A:GLN142 2.4 29.6 1.0
OD1 A:ASP33 2.4 27.9 1.0
O A:TYR37 2.4 24.0 1.0
O A:HOH705 2.4 27.0 1.0
O A:HOH802 2.4 28.6 1.0
O A:HOH729 2.6 28.1 1.0
CD A:GLN142 3.3 28.9 1.0
C A:ASP33 3.3 24.4 1.0
CG A:ASP33 3.5 26.6 1.0
C A:TYR37 3.6 23.5 1.0
NE2 A:GLN142 3.7 29.9 1.0
O A:HOH709 3.8 28.1 1.0
CA A:ASP33 4.0 26.5 1.0
O A:HOH849 4.0 30.1 1.0
O A:HOH829 4.1 30.4 1.0
CB A:ASP33 4.2 23.5 1.0
OD2 A:ASP33 4.4 24.8 1.0
N A:GLN34 4.4 27.0 1.0
CA A:LEU38 4.4 22.8 1.0
N A:LEU38 4.4 23.3 1.0
CG A:GLN142 4.6 29.7 1.0
O A:GLN34 4.6 21.1 1.0
CA A:GLN34 4.6 25.7 1.0
CA A:TYR37 4.6 22.7 1.0
C A:GLN34 4.7 24.0 1.0
CB A:TYR37 4.7 23.3 1.0
O A:ALA537 4.8 19.0 1.0
C A:LEU38 4.9 23.6 1.0
CD A:PRO39 4.9 23.9 1.0
N A:TYR37 4.9 21.9 1.0

Reference:

P.Munshi, C.B.Stanley, S.Ghimire-Rijal, X.Lu, D.A.Myles, M.J.Cuneo. Molecular Details of Ligand Selectivity Determinants in A Promiscuous Beta-Glucan Periplasmic Binding Protein. Bmc Struct.Biol. V. 13 18 2013.
ISSN: ESSN 1472-6807
PubMed: 24090243
DOI: 10.1186/1472-6807-13-18
Page generated: Sat Dec 12 04:53:28 2020

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