Calcium in PDB 4jyo: Structural Basis For Angiopoietin-1 Mediated Signaling Initiation

The structure of Structural Basis For Angiopoietin-1 Mediated Signaling Initiation, PDB code: 4jyo was solved by X.Yu, T.C.M.Seegar, A.C.Dalton, D.Tzvetkova-Robev, Y.Goldgur, D.B.Nikolov, W.A.Barton, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.50
Space group	P 64 2 2
Cell size a, b, c (Å), α, β, γ (°)	80.968, 80.968, 187.216, 90.00, 90.00, 120.00
R / Rfree (%)	18.6 / 24.2

The binding sites of Calcium atom in the Structural Basis For Angiopoietin-1 Mediated Signaling Initiation (pdb code 4jyo). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structural Basis For Angiopoietin-1 Mediated Signaling Initiation, PDB code: 4jyo:

Calcium binding site 1 out of 1 in the Structural Basis For Angiopoietin-1 Mediated Signaling Initiation


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structural Basis For Angiopoietin-1 Mediated Signaling Initiation within 5.0Å range: probe atom residue distance (Å) B Occ X:Ca301 b:52.7 occ:1.00 OD1 X:ASP154 2.3 44.5 1.0 O X:HOH488 2.4 37.9 1.0 O X:CYS158 2.4 47.8 1.0 OD1 X:ASP152 2.5 45.4 1.0 O X:HOH470 2.5 18.2 1.0 O X:CYS156 2.7 48.0 1.0 OD2 X:ASP152 3.1 49.6 1.0 CG X:ASP152 3.1 48.0 1.0 CG X:ASP154 3.2 45.9 1.0 OD2 X:ASP154 3.4 51.6 1.0 C X:CYS156 3.5 48.5 1.0 C X:CYS158 3.6 48.5 1.0 O X:HOH443 3.8 24.9 1.0 O X:MET157 4.1 53.1 1.0 CA X:LYS159 4.1 43.5 1.0 C X:MET157 4.1 52.3 1.0 N X:CYS156 4.2 47.1 1.0 CA X:CYS156 4.2 47.6 1.0 N X:LYS159 4.2 46.3 1.0 CB X:CYS156 4.3 46.8 1.0 N X:MET157 4.3 50.0 1.0 O X:ASP154 4.4 44.2 1.0 CA X:MET157 4.5 52.6 1.0 N X:CYS158 4.5 51.0 1.0 CG X:LYS159 4.5 49.8 1.0 CB X:ASP154 4.6 42.7 1.0 CB X:ASP152 4.7 47.0 1.0 O X:HOH425 4.7 31.6 1.0 CA X:CYS158 4.7 51.0 1.0 C X:ASP154 4.7 44.0 1.0 N X:ASP154 4.7 42.0 1.0 CB X:LYS159 4.8 45.1 1.0 CA X:ASP154 4.9 42.7 1.0

X.Yu, T.C.Seegar, A.C.Dalton, D.Tzvetkova-Robev, Y.Goldgur, K.R.Rajashankar, D.B.Nikolov, W.A.Barton. Structural Basis For Angiopoietin-1-Mediated Signaling Initiation. Proc.Natl.Acad.Sci.Usa V. 110 7205 2013.
ISSN: ISSN 0027-8424
PubMed: 23592718
DOI: 10.1073/PNAS.1216890110