Calcium in PDB 4k1j: Induced Opening of Influenza Virus Neuraminidase N2 150-Loop Suggests An Important Role in Inhibitor Binding

The structure of Induced Opening of Influenza Virus Neuraminidase N2 150-Loop Suggests An Important Role in Inhibitor Binding, PDB code: 4k1j was solved by Y.Wu, F.Gao, J.X.Qi, G.F.Gao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.40 / 2.20
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	114.333, 139.306, 140.051, 90.00, 90.00, 90.00
R / Rfree (%)	19.9 / 23.8

The binding sites of Calcium atom in the Induced Opening of Influenza Virus Neuraminidase N2 150-Loop Suggests An Important Role in Inhibitor Binding (pdb code 4k1j). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Induced Opening of Influenza Virus Neuraminidase N2 150-Loop Suggests An Important Role in Inhibitor Binding, PDB code: 4k1j:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Induced Opening of Influenza Virus Neuraminidase N2 150-Loop Suggests An Important Role in Inhibitor Binding


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Induced Opening of Influenza Virus Neuraminidase N2 150-Loop Suggests An Important Role in Inhibitor Binding within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca501 b:10.6 occ:1.00 O A:ASP293 2.2 10.1 1.0 O A:GLN347 2.3 16.4 1.0 O A:HOH601 2.3 12.9 1.0 OD2 A:ASP324 2.4 13.5 1.0 O A:GLY297 2.4 14.0 1.0 O A:GLY345 2.4 18.8 1.0 C A:ASP293 3.4 10.1 1.0 C A:GLN347 3.4 16.9 1.0 CG A:ASP324 3.5 13.6 1.0 C A:GLY345 3.5 19.1 1.0 C A:GLY297 3.5 13.8 1.0 CA A:GLY348 3.9 13.8 1.0 CA A:ASN294 4.0 10.5 1.0 O A:HOH609 4.1 5.3 1.0 N A:GLY348 4.1 15.1 1.0 N A:ASN294 4.2 10.2 1.0 CA A:GLY345 4.2 19.6 1.0 OD1 A:ASP324 4.2 13.6 1.0 N A:SER298 4.3 13.2 1.0 CA A:SER298 4.3 12.6 1.0 C A:THR346 4.3 19.3 1.0 O A:THR346 4.3 18.7 1.0 CB A:ASP324 4.4 13.2 1.0 C A:ASN294 4.5 10.7 1.0 N A:GLN347 4.5 19.2 1.0 N A:THR346 4.5 19.2 1.0 CA A:ASP293 4.5 10.0 1.0 O A:ARG344 4.6 21.0 1.0 N A:GLY297 4.6 14.1 1.0 CA A:GLY297 4.6 14.0 1.0 CA A:GLN347 4.6 18.8 1.0 OD1 A:ASP293 4.7 9.6 1.0 N A:ASP293 4.7 10.1 1.0 CA A:THR346 4.7 19.8 1.0 CB A:ASP293 4.8 10.0 1.0 N A:TRP295 4.8 11.2 1.0 O A:PRO326 5.0 12.2 1.0

Calcium binding site 2 out of 2 in the Induced Opening of Influenza Virus Neuraminidase N2 150-Loop Suggests An Important Role in Inhibitor Binding


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Induced Opening of Influenza Virus Neuraminidase N2 150-Loop Suggests An Important Role in Inhibitor Binding within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca501 b:11.5 occ:1.00 O B:ASP293 2.2 10.5 1.0 O B:HOH636 2.2 13.2 1.0 O B:GLY297 2.3 14.4 1.0 O B:GLN347 2.3 16.1 1.0 O B:GLY345 2.4 17.9 1.0 OD2 B:ASP324 2.5 12.8 1.0 C B:ASP293 3.4 10.5 1.0 C B:GLY297 3.5 14.3 1.0 C B:GLY345 3.5 18.6 1.0 C B:GLN347 3.5 16.7 1.0 CG B:ASP324 3.5 12.8 1.0 CA B:GLY348 4.0 13.7 1.0 CA B:ASN294 4.0 10.9 1.0 O B:HOH603 4.1 6.0 1.0 CA B:GLY345 4.1 19.2 1.0 N B:ASN294 4.2 10.6 1.0 N B:GLY348 4.2 14.9 1.0 N B:SER298 4.2 13.9 1.0 OD1 B:ASP324 4.2 13.2 1.0 CA B:SER298 4.2 13.6 1.0 C B:THR346 4.3 19.2 1.0 O B:THR346 4.4 18.9 1.0 CB B:ASP324 4.4 12.4 1.0 N B:GLN347 4.5 18.7 1.0 CA B:ASP293 4.5 10.5 1.0 C B:ASN294 4.5 11.2 1.0 N B:THR346 4.5 18.8 1.0 N B:GLY297 4.5 14.3 1.0 CA B:GLY297 4.5 14.2 1.0 O B:ARG344 4.5 20.6 1.0 CA B:GLN347 4.6 18.5 1.0 CB B:ASP293 4.6 10.5 1.0 OD1 B:ASP293 4.6 10.3 1.0 N B:ASP293 4.7 10.7 1.0 N B:TRP295 4.8 11.7 1.0 CA B:THR346 4.8 19.4 1.0 O B:ASN294 5.0 11.3 1.0

Y.Wu, G.Qin, F.Gao, Y.Liu, C.J.Vavricka, J.Qi, H.Jiang, K.Yu, G.F.Gao. Induced Opening of Influenza Virus Neuraminidase N2 150-Loop Suggests An Important Role in Inhibitor Binding Sci Rep V. 3 1551 2013.
ISSN: ESSN 2045-2322
PubMed: 23531861
DOI: 10.1038/SREP01551