Calcium in PDB 4k3y: Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11)

The structure of Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11), PDB code: 4k3y was solved by X.Zhu, I.A.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.87 / 2.68
Space group	P 61
Cell size a, b, c (Å), α, β, γ (°)	181.290, 181.290, 136.597, 90.00, 90.00, 120.00
R / Rfree (%)	17.8 / 22

The binding sites of Calcium atom in the Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11) (pdb code 4k3y). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11), PDB code: 4k3y:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca604 b:68.2 occ:1.00 O A:ASP297 2.8 71.7 1.0 O A:ASN293 2.8 61.0 1.0 O A:GLY347 2.8 58.8 1.0 O A:GLY345 3.0 80.0 1.0 OD2 A:ASP324 3.0 74.7 1.0 C A:GLY345 3.4 65.3 1.0 CG A:ASP324 3.6 62.0 1.0 C A:ASP297 3.6 60.2 1.0 C A:GLY347 3.7 61.5 1.0 CA A:GLY345 3.8 59.9 1.0 O A:GLU346 4.0 63.7 1.0 CB A:ASP324 4.0 56.4 1.0 C A:GLU346 4.1 58.1 1.0 C A:ASN293 4.1 59.3 1.0 N A:GLU346 4.1 62.2 1.0 CA A:ALA298 4.2 65.9 1.0 N A:ALA298 4.2 65.3 1.0 CA A:GLY348 4.2 47.1 1.0 O A:GLU344 4.2 87.5 1.0 O A:PRO326 4.3 67.1 1.0 N A:GLY348 4.3 50.6 1.0 O A:HOH724 4.4 65.0 1.0 OD1 A:ASP324 4.4 65.1 1.0 N A:GLY347 4.4 56.0 1.0 N A:ASP297 4.5 49.4 1.0 CA A:GLU346 4.5 59.9 1.0 CA A:GLY347 4.6 60.3 1.0 CA A:ASP297 4.6 61.2 1.0 CA A:LEU294 4.7 50.0 1.0 N A:LEU294 4.9 51.2 1.0 N A:GLY345 4.9 74.3 1.0 C A:LEU294 5.0 52.9 1.0 C A:GLU344 5.0 78.7 1.0

Calcium binding site 2 out of 4 in the Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11) within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca605 b:68.3 occ:1.00 O B:ASN293 2.8 56.0 1.0 O B:GLY347 2.9 81.8 1.0 O B:ASP297 3.0 60.3 1.0 O B:GLY345 3.0 82.7 1.0 OD2 B:ASP324 3.0 69.8 1.0 C B:GLY345 3.4 66.5 1.0 CG B:ASP324 3.6 65.8 1.0 C B:GLY347 3.6 67.2 1.0 CA B:GLY345 3.7 54.1 1.0 C B:ASP297 3.7 56.7 1.0 O B:GLU344 3.9 66.9 1.0 CA B:GLY348 3.9 57.0 1.0 C B:ASN293 4.0 65.5 1.0 CB B:ASP324 4.0 60.7 1.0 CA B:ALA298 4.1 64.3 1.0 O B:PRO326 4.1 61.9 1.0 N B:GLY348 4.1 69.7 1.0 O B:GLU346 4.2 65.4 1.0 N B:ALA298 4.2 62.7 1.0 C B:GLU346 4.2 61.0 1.0 N B:GLU346 4.2 69.8 1.0 OD1 B:ASP324 4.3 59.8 1.0 N B:GLY347 4.4 56.7 1.0 O B:HOH705 4.5 56.9 1.0 CA B:GLY347 4.6 61.0 1.0 N B:ASP297 4.6 63.8 1.0 CA B:LEU294 4.6 62.7 1.0 CA B:GLU346 4.6 73.8 1.0 N B:GLY345 4.7 56.3 1.0 C B:GLU344 4.7 64.3 1.0 CA B:ASP297 4.7 65.8 1.0 N B:LEU294 4.8 58.4 1.0 CD B:PRO326 4.9 50.8 1.0 CB B:ALA298 4.9 65.3 1.0 C B:LEU294 4.9 63.4 1.0

Calcium binding site 3 out of 4 in the Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11) within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca608 b:73.0 occ:1.00 O C:GLY347 2.8 66.2 1.0 O C:ASN293 2.8 52.2 1.0 O C:ASP297 2.9 71.7 1.0 O C:GLY345 3.0 78.0 1.0 OD2 C:ASP324 3.1 80.8 1.0 C C:GLY345 3.4 60.9 1.0 CG C:ASP324 3.5 70.5 1.0 C C:GLY347 3.6 61.3 1.0 CA C:GLY345 3.7 64.1 1.0 C C:ASP297 3.8 62.4 1.0 CB C:ASP324 3.9 58.2 1.0 CA C:ALA298 4.0 49.1 1.0 C C:ASN293 4.1 61.8 1.0 CA C:GLY348 4.1 52.0 1.0 O C:GLU344 4.1 82.5 1.0 O C:GLU346 4.1 70.7 1.0 O C:PRO326 4.1 54.3 1.0 C C:GLU346 4.2 64.1 1.0 OD1 C:ASP324 4.2 71.4 1.0 N C:GLY348 4.2 58.8 1.0 N C:ALA298 4.2 64.7 1.0 N C:GLU346 4.3 49.5 1.0 N C:GLY347 4.4 57.2 1.0 CA C:GLY347 4.6 51.9 1.0 CA C:LEU294 4.7 53.6 1.0 CA C:GLU346 4.7 54.9 1.0 N C:GLY345 4.8 61.9 1.0 CB C:ALA298 4.8 50.2 1.0 N C:LEU294 4.8 56.4 1.0 N C:ASP297 4.9 51.5 1.0 C C:GLU344 4.9 61.0 1.0 CA C:ASP297 4.9 63.1 1.0 C C:ALA298 4.9 58.4 1.0 CD C:PRO326 5.0 65.2 1.0

Calcium binding site 4 out of 4 in the Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11) within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca604 b:0.1 occ:1.00 O D:ASN293 1.9 0.3 1.0 O D:ASP297 2.4 0.5 1.0 OD2 D:ASP324 2.5 91.8 1.0 O D:GLY347 2.8 0.8 1.0 O D:GLY345 2.9 0.2 1.0 C D:ASN293 3.2 0.4 1.0 CG D:ASP324 3.4 0.0 1.0 C D:ASP297 3.5 0.0 1.0 C D:GLY345 3.7 0.5 1.0 C D:GLY347 3.8 0.9 1.0 N D:LEU294 4.1 89.9 1.0 CA D:GLY348 4.1 0.1 1.0 CA D:LEU294 4.1 92.1 1.0 OD1 D:ASP324 4.2 98.5 1.0 CA D:ALA298 4.2 0.8 1.0 CA D:ASN293 4.2 0.9 1.0 CB D:ASP324 4.2 98.6 1.0 N D:ALA298 4.3 98.4 1.0 CA D:GLY345 4.3 0.2 1.0 CB D:ASN293 4.4 0.1 1.0 N D:GLY348 4.4 0.6 1.0 N D:ASN293 4.5 0.1 1.0 C D:GLU346 4.5 0.7 1.0 N D:ASP297 4.5 0.9 1.0 C D:LEU294 4.6 95.4 1.0 CA D:ASP297 4.6 0.3 1.0 O D:GLU346 4.6 0.6 1.0 N D:GLU346 4.7 0.2 1.0 N D:GLY347 4.7 0.3 1.0 O D:GLU344 4.8 0.9 1.0 N D:TRP295 4.8 99.9 1.0 CA D:GLY347 4.9 0.7 1.0 CA D:GLU346 4.9 0.8 1.0

S.Tong, X.Zhu, Y.Li, M.Shi, J.Zhang, M.Bourgeois, H.Yang, X.Chen, S.Recuenco, J.Gomez, L.M.Chen, A.Johnson, Y.Tao, C.Dreyfus, W.Yu, R.Mcbride, P.J.Carney, A.T.Gilbert, J.Chang, Z.Guo, C.T.Davis, J.C.Paulson, J.Stevens, C.E.Rupprecht, E.C.Holmes, I.A.Wilson, R.O.Donis. New World Bats Harbor Diverse Influenza A Viruses. Plos Pathog. V. 9 03657 2013.
ISSN: ISSN 1553-7366
PubMed: 24130481
DOI: 10.1371/JOURNAL.PPAT.1003657