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Calcium in PDB 4k3y: Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11)

Protein crystallography data

The structure of Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11), PDB code: 4k3y was solved by X.Zhu, I.A.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.87 / 2.68
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 181.290, 181.290, 136.597, 90.00, 90.00, 120.00
R / Rfree (%) 17.8 / 22

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11) (pdb code 4k3y). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11), PDB code: 4k3y:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in 4k3y

Go back to Calcium Binding Sites List in 4k3y
Calcium binding site 1 out of 4 in the Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca604

b:68.2
occ:1.00
O A:ASP297 2.8 71.7 1.0
O A:ASN293 2.8 61.0 1.0
O A:GLY347 2.8 58.8 1.0
O A:GLY345 3.0 80.0 1.0
OD2 A:ASP324 3.0 74.7 1.0
C A:GLY345 3.4 65.3 1.0
CG A:ASP324 3.6 62.0 1.0
C A:ASP297 3.6 60.2 1.0
C A:GLY347 3.7 61.5 1.0
CA A:GLY345 3.8 59.9 1.0
O A:GLU346 4.0 63.7 1.0
CB A:ASP324 4.0 56.4 1.0
C A:GLU346 4.1 58.1 1.0
C A:ASN293 4.1 59.3 1.0
N A:GLU346 4.1 62.2 1.0
CA A:ALA298 4.2 65.9 1.0
N A:ALA298 4.2 65.3 1.0
CA A:GLY348 4.2 47.1 1.0
O A:GLU344 4.2 87.5 1.0
O A:PRO326 4.3 67.1 1.0
N A:GLY348 4.3 50.6 1.0
O A:HOH724 4.4 65.0 1.0
OD1 A:ASP324 4.4 65.1 1.0
N A:GLY347 4.4 56.0 1.0
N A:ASP297 4.5 49.4 1.0
CA A:GLU346 4.5 59.9 1.0
CA A:GLY347 4.6 60.3 1.0
CA A:ASP297 4.6 61.2 1.0
CA A:LEU294 4.7 50.0 1.0
N A:LEU294 4.9 51.2 1.0
N A:GLY345 4.9 74.3 1.0
C A:LEU294 5.0 52.9 1.0
C A:GLU344 5.0 78.7 1.0

Calcium binding site 2 out of 4 in 4k3y

Go back to Calcium Binding Sites List in 4k3y
Calcium binding site 2 out of 4 in the Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca605

b:68.3
occ:1.00
O B:ASN293 2.8 56.0 1.0
O B:GLY347 2.9 81.8 1.0
O B:ASP297 3.0 60.3 1.0
O B:GLY345 3.0 82.7 1.0
OD2 B:ASP324 3.0 69.8 1.0
C B:GLY345 3.4 66.5 1.0
CG B:ASP324 3.6 65.8 1.0
C B:GLY347 3.6 67.2 1.0
CA B:GLY345 3.7 54.1 1.0
C B:ASP297 3.7 56.7 1.0
O B:GLU344 3.9 66.9 1.0
CA B:GLY348 3.9 57.0 1.0
C B:ASN293 4.0 65.5 1.0
CB B:ASP324 4.0 60.7 1.0
CA B:ALA298 4.1 64.3 1.0
O B:PRO326 4.1 61.9 1.0
N B:GLY348 4.1 69.7 1.0
O B:GLU346 4.2 65.4 1.0
N B:ALA298 4.2 62.7 1.0
C B:GLU346 4.2 61.0 1.0
N B:GLU346 4.2 69.8 1.0
OD1 B:ASP324 4.3 59.8 1.0
N B:GLY347 4.4 56.7 1.0
O B:HOH705 4.5 56.9 1.0
CA B:GLY347 4.6 61.0 1.0
N B:ASP297 4.6 63.8 1.0
CA B:LEU294 4.6 62.7 1.0
CA B:GLU346 4.6 73.8 1.0
N B:GLY345 4.7 56.3 1.0
C B:GLU344 4.7 64.3 1.0
CA B:ASP297 4.7 65.8 1.0
N B:LEU294 4.8 58.4 1.0
CD B:PRO326 4.9 50.8 1.0
CB B:ALA298 4.9 65.3 1.0
C B:LEU294 4.9 63.4 1.0

Calcium binding site 3 out of 4 in 4k3y

Go back to Calcium Binding Sites List in 4k3y
Calcium binding site 3 out of 4 in the Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca608

b:73.0
occ:1.00
O C:GLY347 2.8 66.2 1.0
O C:ASN293 2.8 52.2 1.0
O C:ASP297 2.9 71.7 1.0
O C:GLY345 3.0 78.0 1.0
OD2 C:ASP324 3.1 80.8 1.0
C C:GLY345 3.4 60.9 1.0
CG C:ASP324 3.5 70.5 1.0
C C:GLY347 3.6 61.3 1.0
CA C:GLY345 3.7 64.1 1.0
C C:ASP297 3.8 62.4 1.0
CB C:ASP324 3.9 58.2 1.0
CA C:ALA298 4.0 49.1 1.0
C C:ASN293 4.1 61.8 1.0
CA C:GLY348 4.1 52.0 1.0
O C:GLU344 4.1 82.5 1.0
O C:GLU346 4.1 70.7 1.0
O C:PRO326 4.1 54.3 1.0
C C:GLU346 4.2 64.1 1.0
OD1 C:ASP324 4.2 71.4 1.0
N C:GLY348 4.2 58.8 1.0
N C:ALA298 4.2 64.7 1.0
N C:GLU346 4.3 49.5 1.0
N C:GLY347 4.4 57.2 1.0
CA C:GLY347 4.6 51.9 1.0
CA C:LEU294 4.7 53.6 1.0
CA C:GLU346 4.7 54.9 1.0
N C:GLY345 4.8 61.9 1.0
CB C:ALA298 4.8 50.2 1.0
N C:LEU294 4.8 56.4 1.0
N C:ASP297 4.9 51.5 1.0
C C:GLU344 4.9 61.0 1.0
CA C:ASP297 4.9 63.1 1.0
C C:ALA298 4.9 58.4 1.0
CD C:PRO326 5.0 65.2 1.0

Calcium binding site 4 out of 4 in 4k3y

Go back to Calcium Binding Sites List in 4k3y
Calcium binding site 4 out of 4 in the Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca604

b:0.1
occ:1.00
O D:ASN293 1.9 0.3 1.0
O D:ASP297 2.4 0.5 1.0
OD2 D:ASP324 2.5 91.8 1.0
O D:GLY347 2.8 0.8 1.0
O D:GLY345 2.9 0.2 1.0
C D:ASN293 3.2 0.4 1.0
CG D:ASP324 3.4 0.0 1.0
C D:ASP297 3.5 0.0 1.0
C D:GLY345 3.7 0.5 1.0
C D:GLY347 3.8 0.9 1.0
N D:LEU294 4.1 89.9 1.0
CA D:GLY348 4.1 0.1 1.0
CA D:LEU294 4.1 92.1 1.0
OD1 D:ASP324 4.2 98.5 1.0
CA D:ALA298 4.2 0.8 1.0
CA D:ASN293 4.2 0.9 1.0
CB D:ASP324 4.2 98.6 1.0
N D:ALA298 4.3 98.4 1.0
CA D:GLY345 4.3 0.2 1.0
CB D:ASN293 4.4 0.1 1.0
N D:GLY348 4.4 0.6 1.0
N D:ASN293 4.5 0.1 1.0
C D:GLU346 4.5 0.7 1.0
N D:ASP297 4.5 0.9 1.0
C D:LEU294 4.6 95.4 1.0
CA D:ASP297 4.6 0.3 1.0
O D:GLU346 4.6 0.6 1.0
N D:GLU346 4.7 0.2 1.0
N D:GLY347 4.7 0.3 1.0
O D:GLU344 4.8 0.9 1.0
N D:TRP295 4.8 99.9 1.0
CA D:GLY347 4.9 0.7 1.0
CA D:GLU346 4.9 0.8 1.0

Reference:

S.Tong, X.Zhu, Y.Li, M.Shi, J.Zhang, M.Bourgeois, H.Yang, X.Chen, S.Recuenco, J.Gomez, L.M.Chen, A.Johnson, Y.Tao, C.Dreyfus, W.Yu, R.Mcbride, P.J.Carney, A.T.Gilbert, J.Chang, Z.Guo, C.T.Davis, J.C.Paulson, J.Stevens, C.E.Rupprecht, E.C.Holmes, I.A.Wilson, R.O.Donis. New World Bats Harbor Diverse Influenza A Viruses. Plos Pathog. V. 9 03657 2013.
ISSN: ISSN 1553-7366
PubMed: 24130481
DOI: 10.1371/JOURNAL.PPAT.1003657
Page generated: Sat Dec 12 04:54:23 2020

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