Atomistry » Calcium » PDB 4k1c-4k9l » 4k6d
Atomistry »
  Calcium »
    PDB 4k1c-4k9l »
      4k6d »

Calcium in PDB 4k6d: Crystal Structure of Staphylococcal Nuclease Variant V23M/T62F at Cryogenic Temperature

Enzymatic activity of Crystal Structure of Staphylococcal Nuclease Variant V23M/T62F at Cryogenic Temperature

All present enzymatic activity of Crystal Structure of Staphylococcal Nuclease Variant V23M/T62F at Cryogenic Temperature:
3.1.31.1;

Protein crystallography data

The structure of Crystal Structure of Staphylococcal Nuclease Variant V23M/T62F at Cryogenic Temperature, PDB code: 4k6d was solved by J.A.Caro, E.Flores, J.L.Schlessman, A.Heroux, B.Garcia-Moreno E., with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.53 / 1.65
Space group P 41
Cell size a, b, c (Å), α, β, γ (°) 47.532, 47.532, 62.751, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 21.3

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Staphylococcal Nuclease Variant V23M/T62F at Cryogenic Temperature (pdb code 4k6d). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Staphylococcal Nuclease Variant V23M/T62F at Cryogenic Temperature, PDB code: 4k6d:

Calcium binding site 1 out of 1 in 4k6d

Go back to Calcium Binding Sites List in 4k6d
Calcium binding site 1 out of 1 in the Crystal Structure of Staphylococcal Nuclease Variant V23M/T62F at Cryogenic Temperature


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Staphylococcal Nuclease Variant V23M/T62F at Cryogenic Temperature within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca202

b:40.5
occ:1.00
OD1 A:ASP40 2.5 29.8 1.0
OD1 A:ASP21 2.6 25.0 1.0
O A:HOH367 2.7 44.5 1.0
O A:HOH366 2.9 43.7 1.0
O4P A:THP201 3.0 26.0 1.0
O A:THR41 3.0 35.8 1.0
CG A:ASP21 3.5 23.1 1.0
O A:HOH376 3.6 35.0 1.0
OD2 A:ASP21 3.6 22.7 1.0
NH2 A:ARG35 3.8 19.3 1.0
CG A:ASP40 3.8 27.9 1.0
N A:THR41 3.8 25.6 1.0
OG1 A:THR41 3.9 26.6 1.0
P2 A:THP201 4.0 28.5 1.0
C A:THR41 4.1 35.7 1.0
O6P A:THP201 4.3 25.0 1.0
CA A:ASP40 4.4 24.4 1.0
CZ A:ARG35 4.5 15.6 1.0
CA A:THR41 4.5 31.7 1.0
C A:ASP40 4.5 27.4 1.0
OD2 A:ASP40 4.6 34.3 1.0
OD1 A:ASP19 4.6 35.3 1.0
O5P A:THP201 4.7 30.4 1.0
CB A:ASP40 4.7 24.6 1.0
NE A:ARG35 4.7 16.9 1.0
CB A:THR41 4.8 29.1 1.0
CB A:ASP21 4.9 21.5 1.0

Reference:

J.A.Caro, J.L.Schlessman, B.Garcia-Moreno E.. Pressure Effects on Proteins To Be Published.
Page generated: Sun Jul 14 08:53:32 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy