Calcium in PDB 4kis: Crystal Structure of A Lsr-Dna Complex

The structure of Crystal Structure of A Lsr-Dna Complex, PDB code: 4kis was solved by K.Rutherford, P.Yuan, K.Perry, G.D.Van Duyne, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.86 / 3.20
Space group	I 2 3
Cell size a, b, c (Å), α, β, γ (°)	290.750, 290.750, 290.750, 90.00, 90.00, 90.00
R / Rfree (%)	23.6 / 25.6

The structure of Crystal Structure of A Lsr-Dna Complex also contains other interesting chemical elements:

Zinc

(Zn)

6 atoms

The binding sites of Calcium atom in the Crystal Structure of A Lsr-Dna Complex (pdb code 4kis). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 7 binding sites of Calcium where determined in the Crystal Structure of A Lsr-Dna Complex, PDB code: 4kis:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7;

Calcium binding site 1 out of 7 in the Crystal Structure of A Lsr-Dna Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Lsr-Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca504 b:0.1 occ:1.00 OG A:SER224 4.3 91.0 1.0 OP1 F:DG6 4.7 67.4 1.0 ND2 A:ASN216 4.9 68.1 1.0 OD2 A:ASP217 5.0 77.7 1.0

Calcium binding site 2 out of 7 in the Crystal Structure of A Lsr-Dna Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Lsr-Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca505 b:0.3 occ:1.00 OD1 A:ASN334 3.0 50.5 0.5 ND2 A:ASN334 3.6 50.5 0.5 CG A:ASN334 3.7 50.5 0.5 OD2 A:ASP330 3.9 0.0 1.0 OE1 D:GLU326 4.1 0.8 1.0 OE2 D:GLU326 4.3 0.8 1.0 NZ D:LYS323 4.4 98.3 1.0 CD D:GLU326 4.6 0.8 1.0

Calcium binding site 3 out of 7 in the Crystal Structure of A Lsr-Dna Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of A Lsr-Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca101 b:0.5 occ:1.00 OP1 E:DG50 4.9 90.0 1.0

Calcium binding site 4 out of 7 in the Crystal Structure of A Lsr-Dna Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of A Lsr-Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca502 b:0.4 occ:1.00 OE2 B:GLU187 4.6 0.7 1.0

Calcium binding site 5 out of 7 in the Crystal Structure of A Lsr-Dna Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of A Lsr-Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca503 b:0.6 occ:1.00 OE2 B:GLU171 3.8 97.9 1.0 OE2 D:GLU236 4.0 77.3 1.0 OE2 B:GLU236 4.4 92.1 1.0 OE2 D:GLU171 4.5 0.2 1.0 NH2 B:ARG178 4.6 68.7 1.0 CD B:GLU171 4.7 97.9 1.0 OE1 B:GLU171 4.8 97.9 1.0 OE2 C:GLU171 4.8 0.1 1.0

Calcium binding site 6 out of 7 in the Crystal Structure of A Lsr-Dna Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Crystal Structure of A Lsr-Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca502 b:0.1 occ:1.00 OE2 C:GLU187 4.6 0.8 1.0

Calcium binding site 7 out of 7 in the Crystal Structure of A Lsr-Dna Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Crystal Structure of A Lsr-Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca502 b:0.8 occ:1.00 OE1 D:GLU186 4.5 0.1 1.0 OE2 D:GLU187 4.8 0.6 1.0

K.Rutherford, P.Yuan, K.Perry, R.Sharp, G.D.Van Duyne. Attachment Site Recognition and Regulation of Directionality By the Serine Integrases. Nucleic Acids Res. V. 41 8341 2013.
ISSN: ISSN 0305-1048
PubMed: 23821671
DOI: 10.1093/NAR/GKT580