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Calcium in PDB 4kkm: Crystal Structure of A Fpp/Gfpp Synthase (Target Efi-501952) From Zymomonas Mobilis, Apo Structure

Enzymatic activity of Crystal Structure of A Fpp/Gfpp Synthase (Target Efi-501952) From Zymomonas Mobilis, Apo Structure

All present enzymatic activity of Crystal Structure of A Fpp/Gfpp Synthase (Target Efi-501952) From Zymomonas Mobilis, Apo Structure:
2.5.1.10;

Protein crystallography data

The structure of Crystal Structure of A Fpp/Gfpp Synthase (Target Efi-501952) From Zymomonas Mobilis, Apo Structure, PDB code: 4kkm was solved by M.W.Vetting, R.Toro, R.Bhosle, N.F.Al Obaidi, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, B.Hillerich, J.Love, R.D.Seidel, H.J.Imker, C.D.Poulter, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative(Efi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.96 / 1.90
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 73.414, 73.414, 229.419, 90.00, 90.00, 90.00
R / Rfree (%) 18.1 / 20.6

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of A Fpp/Gfpp Synthase (Target Efi-501952) From Zymomonas Mobilis, Apo Structure (pdb code 4kkm). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of A Fpp/Gfpp Synthase (Target Efi-501952) From Zymomonas Mobilis, Apo Structure, PDB code: 4kkm:

Calcium binding site 1 out of 1 in 4kkm

Go back to Calcium Binding Sites List in 4kkm
Calcium binding site 1 out of 1 in the Crystal Structure of A Fpp/Gfpp Synthase (Target Efi-501952) From Zymomonas Mobilis, Apo Structure


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Fpp/Gfpp Synthase (Target Efi-501952) From Zymomonas Mobilis, Apo Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca302

b:69.9
occ:1.00
 OD1 B:ASP92 2.4 0.4 1.0
OD1 B:ASP86 2.4 45.5 1.0
OD2 B:ASP92 2.5 0.0 1.0
CG B:ASP92 2.7 0.0 1.0
CG B:ASP86 3.2 43.1 1.0
OD2 B:ASP86 3.3 47.8 1.0
O B:HOH483 3.4 54.7 1.0
CB B:ASP92 4.2 99.5 1.0
OD2 B:ASP162 4.4 45.5 1.0
OE2 B:GLU166 4.5 54.7 1.0
OE1 B:GLU166 4.5 50.1 1.0
CB B:ASP86 4.7 28.6 1.0
O B:ASP86 4.8 47.1 1.0
OE1 B:GLN159 4.8 37.0 0.6
CE B:MET91 4.8 91.5 1.0
NE2 B:GLN159 4.9 43.4 0.6
N B:ASP92 4.9 99.7 1.0
CD B:GLU166 4.9 53.2 1.0

Reference:

M.W.Vetting, R.Toro, R.Bhosle, N.F.Al Obaidi, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, B.Hillerich, J.Love, R.D.Seidel, H.J.Imker, C.D.Poulter, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi). Crystal Structure of A Fpp/Gfpp Synthase (Target Efi-501952) From Zymomonas Mobilis, Apo Structure To Be Published.
Page generated: Sun Jul 14 09:09:34 2024

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