Calcium in PDB 4kna: Crystal Structure of An N-Succinylglutamate 5-Semialdehyde Dehydrogenase From Burkholderia Thailandensis

All present enzymatic activity of Crystal Structure of An N-Succinylglutamate 5-Semialdehyde Dehydrogenase From Burkholderia Thailandensis:
1.2.1.71;

The structure of Crystal Structure of An N-Succinylglutamate 5-Semialdehyde Dehydrogenase From Burkholderia Thailandensis, PDB code: 4kna was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.26 / 1.95
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	170.050, 120.690, 53.910, 90.00, 107.36, 90.00
R / Rfree (%)	15.2 / 19.2

The structure of Crystal Structure of An N-Succinylglutamate 5-Semialdehyde Dehydrogenase From Burkholderia Thailandensis also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Calcium atom in the Crystal Structure of An N-Succinylglutamate 5-Semialdehyde Dehydrogenase From Burkholderia Thailandensis (pdb code 4kna). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of An N-Succinylglutamate 5-Semialdehyde Dehydrogenase From Burkholderia Thailandensis, PDB code: 4kna:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of An N-Succinylglutamate 5-Semialdehyde Dehydrogenase From Burkholderia Thailandensis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of An N-Succinylglutamate 5-Semialdehyde Dehydrogenase From Burkholderia Thailandensis within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca504 b:54.7 occ:1.00 O A:HOH951 2.3 33.0 1.0 O2 A:EDO502 2.4 40.7 1.0 O1 A:EDO502 2.5 36.8 1.0 O A:THR400 2.5 23.4 1.0 O A:HOH952 2.5 20.2 1.0 C1 A:EDO502 3.3 39.8 1.0 C2 A:EDO502 3.4 39.1 1.0 C A:THR400 3.6 25.4 1.0 CA A:ALA401 4.1 26.1 1.0 O A:ASN398 4.1 27.8 1.0 NE A:ARG424 4.1 35.4 1.0 N A:ALA401 4.3 25.8 1.0 NH2 A:ARG424 4.4 40.5 1.0 O A:PHE402 4.5 24.0 1.0 C A:ALA401 4.5 25.7 1.0 O A:HOH653 4.5 24.7 1.0 O A:HOH678 4.6 31.3 1.0 N A:THR400 4.7 27.0 1.0 CZ A:ARG424 4.7 38.0 1.0 O A:ALA401 4.8 22.8 1.0 CA A:THR400 4.8 26.8 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of An N-Succinylglutamate 5-Semialdehyde Dehydrogenase From Burkholderia Thailandensis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of An N-Succinylglutamate 5-Semialdehyde Dehydrogenase From Burkholderia Thailandensis within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca504 b:63.6 occ:1.00 O1 B:EDO503 2.2 35.1 1.0 O B:THR400 2.5 22.5 1.0 O B:HOH1035 2.5 37.3 1.0 O B:HOH678 2.6 18.8 1.0 O2 B:EDO503 2.6 46.3 1.0 C1 B:EDO503 3.2 36.7 1.0 C2 B:EDO503 3.5 38.3 1.0 C B:THR400 3.7 23.1 1.0 O B:ASN398 4.0 21.5 1.0 CA B:ALA401 4.1 21.2 1.0 NE B:ARG424 4.1 29.2 1.0 O B:HOH652 4.3 21.6 1.0 N B:ALA401 4.3 21.6 1.0 NH2 B:ARG424 4.4 33.3 1.0 O B:PHE402 4.4 19.1 1.0 C B:ALA401 4.4 19.8 1.0 O B:HOH740 4.7 25.5 1.0 O B:ALA401 4.7 19.4 1.0 CZ B:ARG424 4.7 33.2 1.0 N B:THR400 4.7 23.4 1.0 CA B:THR400 4.9 23.3 1.0 N B:PHE402 5.0 19.3 1.0

T.E.Edwards, J.Abendroth, Seattle Structural Genomics Center For Infectious Disease(Ssgcid). Crystal Structure of An N-Succinylglutamate 5-Semialdehyde Dehydrogenase From Burkholderia Thailandensis To Be Published.