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Calcium in PDB 4lhk: Structure of the N-Terminal Domain of the Lg-FLO1 Adhesin (N-Lg-FLO1P) From the Yeast Saccharomyces Pastorianus, in Complex with Calcium and Alpha-1,2-Mannobiose

Protein crystallography data

The structure of Structure of the N-Terminal Domain of the Lg-FLO1 Adhesin (N-Lg-FLO1P) From the Yeast Saccharomyces Pastorianus, in Complex with Calcium and Alpha-1,2-Mannobiose, PDB code: 4lhk was solved by F.S.Ielasi, R.G.Willaert, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.13 / 1.73
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 38.618, 85.476, 68.240, 90.00, 93.72, 90.00
R / Rfree (%) 13.7 / 19.3

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of the N-Terminal Domain of the Lg-FLO1 Adhesin (N-Lg-FLO1P) From the Yeast Saccharomyces Pastorianus, in Complex with Calcium and Alpha-1,2-Mannobiose (pdb code 4lhk). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structure of the N-Terminal Domain of the Lg-FLO1 Adhesin (N-Lg-FLO1P) From the Yeast Saccharomyces Pastorianus, in Complex with Calcium and Alpha-1,2-Mannobiose, PDB code: 4lhk:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 4lhk

Go back to Calcium Binding Sites List in 4lhk
Calcium binding site 1 out of 2 in the Structure of the N-Terminal Domain of the Lg-FLO1 Adhesin (N-Lg-FLO1P) From the Yeast Saccharomyces Pastorianus, in Complex with Calcium and Alpha-1,2-Mannobiose


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of the N-Terminal Domain of the Lg-FLO1 Adhesin (N-Lg-FLO1P) From the Yeast Saccharomyces Pastorianus, in Complex with Calcium and Alpha-1,2-Mannobiose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca303

b:15.1
occ:1.00
OD1 A:ASN197 2.3 16.0 1.0
O A:LYS199 2.3 14.0 1.0
OD1 A:ASP133 2.3 15.6 1.0
O A:LEU201 2.4 15.0 1.0
OD2 A:ASP134 2.5 13.9 1.0
O4 A:MAN301 2.5 13.5 0.9
O3 A:MAN301 2.5 13.4 0.9
CG A:ASP133 3.3 15.0 1.0
C3 A:MAN301 3.3 14.8 0.9
CG A:ASP134 3.3 12.7 1.0
CG A:ASN197 3.4 13.0 1.0
C4 A:MAN301 3.4 13.2 0.9
C A:LYS199 3.5 13.0 1.0
C A:LEU201 3.5 15.3 1.0
OD2 A:ASP133 3.7 14.4 1.0
OD1 A:ASP134 3.7 18.5 1.0
N A:LEU201 3.8 15.9 1.0
ND2 A:ASN197 3.9 14.6 1.0
N A:LYS199 4.0 12.9 1.0
C A:ALA200 4.1 15.7 1.0
CA A:LEU201 4.2 16.1 1.0
C A:ASP133 4.3 14.5 1.0
O A:ASP133 4.3 17.3 1.0
CA A:LYS199 4.3 14.8 1.0
N A:ALA198 4.4 15.8 1.0
N A:ASP134 4.4 14.1 1.0
O A:ALA200 4.4 14.7 1.0
N A:ALA200 4.4 14.2 1.0
CB A:ASP133 4.5 14.5 1.0
CB A:ASP134 4.5 14.4 1.0
N A:ALA202 4.6 13.0 1.0
CB A:ASN197 4.6 13.1 1.0
CA A:ALA200 4.6 13.7 1.0
CA A:ASN197 4.7 12.6 1.0
CB A:LEU201 4.7 19.9 1.0
C2 A:MAN301 4.7 17.2 0.9
C5 A:MAN301 4.8 17.6 0.9
CG A:LYS199 4.8 22.1 1.0
CB A:ALA200 4.8 13.9 1.0
CA A:ASP133 4.9 17.0 1.0
CA A:ALA202 4.9 13.8 1.0
CA A:ASP134 4.9 14.5 1.0
C A:ASN197 5.0 13.9 1.0

Calcium binding site 2 out of 2 in 4lhk

Go back to Calcium Binding Sites List in 4lhk
Calcium binding site 2 out of 2 in the Structure of the N-Terminal Domain of the Lg-FLO1 Adhesin (N-Lg-FLO1P) From the Yeast Saccharomyces Pastorianus, in Complex with Calcium and Alpha-1,2-Mannobiose


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of the N-Terminal Domain of the Lg-FLO1 Adhesin (N-Lg-FLO1P) From the Yeast Saccharomyces Pastorianus, in Complex with Calcium and Alpha-1,2-Mannobiose within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca303

b:16.1
occ:1.00
O B:LYS199 2.3 14.8 1.0
OD1 B:ASN197 2.3 16.8 1.0
O B:LEU201 2.3 14.2 1.0
OD1 B:ASP133 2.4 16.0 1.0
OD2 B:ASP134 2.4 15.9 1.0
O4 B:MAN301 2.5 13.3 0.9
O3 B:MAN301 2.7 18.3 0.9
CG B:ASP133 3.3 16.2 1.0
CG B:ASP134 3.3 14.2 1.0
C4 B:MAN301 3.4 15.8 0.9
C3 B:MAN301 3.4 16.9 0.9
CG B:ASN197 3.4 13.4 1.0
C B:LEU201 3.5 15.8 1.0
C B:LYS199 3.5 14.0 1.0
OD2 B:ASP133 3.6 16.6 1.0
OD1 B:ASP134 3.6 16.7 1.0
N B:LEU201 3.8 15.5 1.0
N B:LYS199 4.0 14.8 1.0
ND2 B:ASN197 4.0 14.5 1.0
C B:ALA200 4.1 15.3 1.0
CA B:LEU201 4.2 14.0 1.0
C B:ASP133 4.3 17.2 1.0
CA B:LYS199 4.4 16.6 1.0
O B:ASP133 4.4 16.1 1.0
N B:ALA198 4.4 14.8 1.0
N B:ASP134 4.4 16.6 1.0
N B:ALA200 4.5 13.9 1.0
CB B:ASP134 4.5 14.7 1.0
O B:ALA200 4.5 14.9 1.0
CB B:ASP133 4.5 14.9 1.0
N B:ALA202 4.6 13.9 1.0
CB B:ASN197 4.6 14.1 1.0
CA B:ALA200 4.7 14.6 1.0
CA B:ASN197 4.7 12.4 1.0
C5 B:MAN301 4.7 17.6 0.9
CG B:LYS199 4.8 21.9 1.0
CA B:ALA202 4.8 14.5 1.0
C2 B:MAN301 4.9 19.3 0.9
CB B:ALA200 4.9 14.5 1.0
CA B:ASP133 4.9 17.7 1.0
CA B:ASP134 4.9 14.5 1.0
CB B:LEU201 4.9 17.7 1.0

Reference:

K.Goossens, F.S.Ielasi, I.Nookaew, I.Stals, L.Alonso-Sarduy, L.Daenen, S.E.Van Mulders, R.G.E.Van Eijsden, C.Stassen, V.Siewers, F.R.Delvaux, S.Kasas, J.Nielsen, B.Devreese, R.G.Willaert. Molecular Mechanism of Flocculation Self-Recognition in Yeast and Its Role in Mating and Survival To Be Published.
Page generated: Sat Dec 12 04:56:31 2020

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