Calcium in PDB 4lw9: Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg
Protein crystallography data
The structure of Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg, PDB code: 4lw9
was solved by
F.S.Vago,
K.Raghunathan,
J.C.Jens,
W.J.Wedemeyer,
M.Bagdasarian,
J.S.Brunzelle,
D.N.Arvidson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.54 /
1.90
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
88.610,
70.015,
131.544,
90.00,
103.29,
90.00
|
R / Rfree (%)
|
20.2 /
24.5
|
Other elements in 4lw9:
The structure of Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg also contains other interesting chemical elements:
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
14;
Binding sites:
The binding sites of Calcium atom in the Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg
(pdb code 4lw9). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 14 binding sites of Calcium where determined in the
Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg, PDB code: 4lw9:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 14 in 4lw9
Go back to
Calcium Binding Sites List in 4lw9
Calcium binding site 1 out
of 14 in the Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca205
b:42.7
occ:1.00
|
O
|
A:GLN118
|
2.3
|
48.2
|
1.0
|
OD1
|
A:ASP127
|
2.3
|
39.9
|
1.0
|
O
|
A:GLY125
|
2.3
|
38.9
|
1.0
|
O
|
A:GLY120
|
2.3
|
47.9
|
1.0
|
O
|
A:LEU113
|
2.3
|
38.2
|
1.0
|
OD1
|
A:ASP116
|
2.6
|
47.9
|
1.0
|
CG
|
A:ASP116
|
3.4
|
47.6
|
1.0
|
OD2
|
A:ASP116
|
3.4
|
46.7
|
1.0
|
C
|
A:GLY120
|
3.4
|
50.0
|
1.0
|
CG
|
A:ASP127
|
3.5
|
38.2
|
1.0
|
C
|
A:LEU113
|
3.5
|
36.6
|
1.0
|
C
|
A:GLN118
|
3.5
|
51.0
|
1.0
|
C
|
A:GLY125
|
3.5
|
36.8
|
1.0
|
N
|
A:GLY120
|
4.0
|
51.7
|
1.0
|
N
|
A:ASP127
|
4.0
|
33.7
|
1.0
|
C
|
A:GLU119
|
4.0
|
52.6
|
1.0
|
OD2
|
A:ASP127
|
4.1
|
39.9
|
1.0
|
C
|
A:ALA126
|
4.1
|
34.3
|
1.0
|
N
|
A:GLN118
|
4.2
|
50.6
|
1.0
|
CA
|
A:LEU113
|
4.2
|
36.1
|
1.0
|
CA
|
A:GLY120
|
4.3
|
50.5
|
1.0
|
CB
|
A:LEU113
|
4.3
|
37.6
|
1.0
|
O
|
A:GLU119
|
4.3
|
53.6
|
1.0
|
CA
|
A:ALA126
|
4.4
|
34.5
|
1.0
|
N
|
A:GLY121
|
4.4
|
50.0
|
1.0
|
CA
|
A:GLN118
|
4.4
|
51.0
|
1.0
|
CA
|
A:GLY125
|
4.4
|
37.2
|
1.0
|
N
|
A:GLU119
|
4.4
|
51.6
|
1.0
|
N
|
A:ALA126
|
4.4
|
35.3
|
1.0
|
CA
|
A:GLU119
|
4.5
|
52.9
|
1.0
|
CA
|
A:ASP127
|
4.5
|
34.0
|
1.0
|
N
|
A:GLY114
|
4.5
|
35.6
|
1.0
|
CA
|
A:GLY121
|
4.5
|
49.9
|
1.0
|
O
|
A:ALA126
|
4.5
|
32.8
|
1.0
|
CB
|
A:ASP127
|
4.6
|
36.1
|
1.0
|
CA
|
A:GLY114
|
4.7
|
36.1
|
1.0
|
CB
|
A:ASP116
|
4.8
|
47.9
|
1.0
|
CD2
|
A:LEU113
|
5.0
|
38.5
|
1.0
|
|
Calcium binding site 2 out
of 14 in 4lw9
Go back to
Calcium Binding Sites List in 4lw9
Calcium binding site 2 out
of 14 in the Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca202
b:34.8
occ:1.00
|
O
|
B:LEU113
|
2.3
|
30.7
|
1.0
|
O
|
B:GLN118
|
2.3
|
40.8
|
1.0
|
O
|
B:GLY125
|
2.3
|
33.3
|
1.0
|
OD1
|
B:ASP127
|
2.3
|
32.6
|
1.0
|
OD1
|
B:ASP116
|
2.3
|
38.0
|
1.0
|
O
|
B:GLY120
|
2.3
|
38.4
|
1.0
|
CG
|
B:ASP116
|
3.1
|
39.8
|
1.0
|
OD2
|
B:ASP116
|
3.2
|
39.7
|
1.0
|
C
|
B:LEU113
|
3.4
|
30.1
|
1.0
|
C
|
B:GLY125
|
3.5
|
31.9
|
1.0
|
C
|
B:GLN118
|
3.5
|
44.4
|
1.0
|
C
|
B:GLY120
|
3.5
|
40.4
|
1.0
|
CG
|
B:ASP127
|
3.5
|
34.0
|
1.0
|
N
|
B:GLY120
|
4.0
|
41.3
|
1.0
|
N
|
B:GLN118
|
4.0
|
45.1
|
1.0
|
N
|
B:ASP127
|
4.1
|
29.8
|
1.0
|
CA
|
B:LEU113
|
4.1
|
28.8
|
1.0
|
C
|
B:GLU119
|
4.2
|
43.3
|
1.0
|
CA
|
B:GLY125
|
4.2
|
32.6
|
1.0
|
OD2
|
B:ASP127
|
4.2
|
34.2
|
1.0
|
C
|
B:ALA126
|
4.2
|
29.9
|
1.0
|
CB
|
B:LEU113
|
4.3
|
31.0
|
1.0
|
CA
|
B:GLY120
|
4.3
|
41.1
|
1.0
|
CA
|
B:GLN118
|
4.4
|
45.1
|
1.0
|
N
|
B:GLU119
|
4.4
|
43.8
|
1.0
|
CA
|
B:GLU119
|
4.5
|
44.3
|
1.0
|
N
|
B:GLY114
|
4.5
|
29.1
|
1.0
|
CA
|
B:ASP127
|
4.5
|
28.5
|
1.0
|
O
|
B:ALA126
|
4.5
|
28.6
|
1.0
|
N
|
B:ALA126
|
4.5
|
31.0
|
1.0
|
N
|
B:GLY121
|
4.5
|
41.4
|
1.0
|
CB
|
B:ASP116
|
4.6
|
40.2
|
1.0
|
O
|
B:GLU119
|
4.6
|
43.7
|
1.0
|
CB
|
B:ASP127
|
4.6
|
30.3
|
1.0
|
CA
|
B:GLY114
|
4.6
|
29.8
|
1.0
|
N
|
B:GLY117
|
4.7
|
43.1
|
1.0
|
CA
|
B:ALA126
|
4.7
|
30.6
|
1.0
|
CA
|
B:GLY121
|
4.7
|
42.0
|
1.0
|
CG
|
B:GLN118
|
4.8
|
48.5
|
1.0
|
N
|
B:ASP116
|
4.9
|
39.5
|
1.0
|
C
|
B:GLY114
|
4.9
|
31.1
|
1.0
|
|
Calcium binding site 3 out
of 14 in 4lw9
Go back to
Calcium Binding Sites List in 4lw9
Calcium binding site 3 out
of 14 in the Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca204
b:39.2
occ:1.00
|
O
|
C:LEU113
|
2.3
|
36.6
|
1.0
|
OD1
|
C:ASP127
|
2.3
|
38.0
|
1.0
|
O
|
C:GLY125
|
2.3
|
35.9
|
1.0
|
OD1
|
C:ASP116
|
2.3
|
43.3
|
1.0
|
O
|
C:GLN118
|
2.3
|
46.8
|
1.0
|
O
|
C:GLY120
|
2.3
|
44.5
|
1.0
|
CG
|
C:ASP116
|
3.1
|
44.0
|
1.0
|
OD2
|
C:ASP116
|
3.2
|
43.7
|
1.0
|
C
|
C:LEU113
|
3.4
|
34.0
|
1.0
|
CG
|
C:ASP127
|
3.4
|
36.2
|
1.0
|
C
|
C:GLY120
|
3.5
|
46.9
|
1.0
|
C
|
C:GLY125
|
3.5
|
33.5
|
1.0
|
C
|
C:GLN118
|
3.6
|
49.2
|
1.0
|
CA
|
C:LEU113
|
4.0
|
32.3
|
1.0
|
OD2
|
C:ASP127
|
4.1
|
38.5
|
1.0
|
N
|
C:GLY120
|
4.1
|
48.6
|
1.0
|
N
|
C:ASP127
|
4.1
|
31.8
|
1.0
|
C
|
C:GLU119
|
4.1
|
49.9
|
1.0
|
CB
|
C:LEU113
|
4.2
|
33.4
|
1.0
|
N
|
C:GLN118
|
4.2
|
48.8
|
1.0
|
CA
|
C:GLY125
|
4.2
|
34.5
|
1.0
|
C
|
C:ALA126
|
4.3
|
31.5
|
1.0
|
CA
|
C:GLY120
|
4.4
|
47.5
|
1.0
|
N
|
C:GLY121
|
4.4
|
47.0
|
1.0
|
O
|
C:GLU119
|
4.4
|
49.1
|
1.0
|
N
|
C:GLU119
|
4.4
|
49.9
|
1.0
|
CA
|
C:ASP127
|
4.5
|
31.5
|
1.0
|
N
|
C:GLY114
|
4.5
|
34.1
|
1.0
|
CA
|
C:GLU119
|
4.5
|
50.7
|
1.0
|
CA
|
C:GLN118
|
4.5
|
49.1
|
1.0
|
N
|
C:ALA126
|
4.5
|
32.6
|
1.0
|
CB
|
C:ASP127
|
4.5
|
34.0
|
1.0
|
CA
|
C:GLY121
|
4.5
|
47.2
|
1.0
|
CB
|
C:ASP116
|
4.6
|
43.9
|
1.0
|
CA
|
C:GLY114
|
4.6
|
34.0
|
1.0
|
O
|
C:ALA126
|
4.7
|
30.0
|
1.0
|
N
|
C:GLY117
|
4.7
|
46.8
|
1.0
|
CA
|
C:ALA126
|
4.7
|
32.5
|
1.0
|
N
|
C:ASP116
|
4.8
|
42.1
|
1.0
|
C
|
C:GLY114
|
5.0
|
35.0
|
1.0
|
|
Calcium binding site 4 out
of 14 in 4lw9
Go back to
Calcium Binding Sites List in 4lw9
Calcium binding site 4 out
of 14 in the Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca205
b:40.3
occ:1.00
|
O
|
D:GLY125
|
2.3
|
38.3
|
1.0
|
O
|
D:GLY120
|
2.3
|
46.8
|
1.0
|
O
|
D:LEU113
|
2.3
|
37.9
|
1.0
|
O
|
D:GLN118
|
2.3
|
46.3
|
1.0
|
OD1
|
D:ASP116
|
2.3
|
42.9
|
1.0
|
OD1
|
D:ASP127
|
2.3
|
36.8
|
1.0
|
CG
|
D:ASP116
|
3.1
|
45.0
|
1.0
|
OD2
|
D:ASP116
|
3.2
|
43.3
|
1.0
|
C
|
D:LEU113
|
3.4
|
36.0
|
1.0
|
C
|
D:GLY120
|
3.5
|
49.3
|
1.0
|
C
|
D:GLY125
|
3.5
|
37.9
|
1.0
|
C
|
D:GLN118
|
3.5
|
49.1
|
1.0
|
CG
|
D:ASP127
|
3.5
|
34.9
|
1.0
|
N
|
D:GLY120
|
4.0
|
50.7
|
1.0
|
N
|
D:ASP127
|
4.1
|
32.6
|
1.0
|
N
|
D:GLN118
|
4.1
|
48.9
|
1.0
|
CA
|
D:LEU113
|
4.1
|
35.9
|
1.0
|
C
|
D:GLU119
|
4.2
|
51.6
|
1.0
|
C
|
D:ALA126
|
4.2
|
34.2
|
1.0
|
OD2
|
D:ASP127
|
4.2
|
37.3
|
1.0
|
CB
|
D:LEU113
|
4.3
|
37.7
|
1.0
|
CA
|
D:GLY125
|
4.3
|
39.5
|
1.0
|
CA
|
D:GLY120
|
4.3
|
49.6
|
1.0
|
N
|
D:GLY114
|
4.4
|
36.1
|
1.0
|
N
|
D:GLY121
|
4.4
|
48.9
|
1.0
|
CA
|
D:GLN118
|
4.4
|
49.9
|
1.0
|
N
|
D:ALA126
|
4.5
|
36.5
|
1.0
|
N
|
D:GLU119
|
4.5
|
50.6
|
1.0
|
CA
|
D:GLY114
|
4.5
|
36.9
|
1.0
|
CA
|
D:GLY121
|
4.5
|
49.7
|
1.0
|
CA
|
D:ASP127
|
4.5
|
31.3
|
1.0
|
CA
|
D:ALA126
|
4.5
|
35.2
|
1.0
|
CA
|
D:GLU119
|
4.6
|
51.6
|
1.0
|
O
|
D:ALA126
|
4.6
|
35.0
|
1.0
|
O
|
D:GLU119
|
4.6
|
53.7
|
1.0
|
CB
|
D:ASP116
|
4.6
|
44.9
|
1.0
|
CB
|
D:ASP127
|
4.6
|
32.8
|
1.0
|
C
|
D:GLY114
|
4.8
|
38.1
|
1.0
|
N
|
D:GLY117
|
4.9
|
48.0
|
1.0
|
N
|
D:ASP116
|
4.9
|
44.5
|
1.0
|
|
Calcium binding site 5 out
of 14 in 4lw9
Go back to
Calcium Binding Sites List in 4lw9
Calcium binding site 5 out
of 14 in the Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca205
b:25.4
occ:1.00
|
O
|
E:GLY125
|
2.3
|
26.3
|
1.0
|
O
|
E:LEU113
|
2.3
|
25.3
|
1.0
|
O
|
E:GLN118
|
2.3
|
28.8
|
1.0
|
OD1
|
E:ASP127
|
2.3
|
26.4
|
1.0
|
O
|
E:GLY120
|
2.3
|
30.0
|
1.0
|
OD1
|
E:ASP116
|
2.3
|
25.6
|
1.0
|
CG
|
E:ASP116
|
3.2
|
28.1
|
1.0
|
OD2
|
E:ASP116
|
3.3
|
27.9
|
1.0
|
C
|
E:LEU113
|
3.4
|
24.8
|
1.0
|
C
|
E:GLY125
|
3.5
|
26.2
|
1.0
|
CG
|
E:ASP127
|
3.5
|
27.3
|
1.0
|
C
|
E:GLN118
|
3.5
|
31.5
|
1.0
|
C
|
E:GLY120
|
3.6
|
32.9
|
1.0
|
CA
|
E:LEU113
|
4.0
|
25.8
|
1.0
|
OD2
|
E:ASP127
|
4.1
|
28.8
|
1.0
|
N
|
E:ASP127
|
4.1
|
23.4
|
1.0
|
N
|
E:GLN118
|
4.1
|
30.6
|
1.0
|
N
|
E:GLY120
|
4.2
|
33.4
|
1.0
|
CB
|
E:LEU113
|
4.2
|
28.9
|
1.0
|
O
|
E:HOH351
|
4.2
|
37.5
|
1.0
|
C
|
E:GLU119
|
4.2
|
33.6
|
1.0
|
CA
|
E:GLY125
|
4.3
|
27.4
|
1.0
|
C
|
E:ALA126
|
4.3
|
23.5
|
1.0
|
N
|
E:GLY114
|
4.4
|
22.9
|
1.0
|
CA
|
E:GLN118
|
4.4
|
32.2
|
1.0
|
CA
|
E:GLY120
|
4.5
|
32.4
|
1.0
|
N
|
E:GLU119
|
4.5
|
31.9
|
1.0
|
N
|
E:GLY121
|
4.5
|
33.1
|
1.0
|
N
|
E:ALA126
|
4.5
|
24.6
|
1.0
|
CA
|
E:GLY121
|
4.5
|
35.1
|
1.0
|
CA
|
E:GLU119
|
4.5
|
32.8
|
1.0
|
CA
|
E:ASP127
|
4.6
|
22.6
|
1.0
|
O
|
E:GLU119
|
4.6
|
32.9
|
1.0
|
CA
|
E:GLY114
|
4.6
|
22.5
|
1.0
|
CA
|
E:ALA126
|
4.6
|
24.7
|
1.0
|
CB
|
E:ASP127
|
4.6
|
24.9
|
1.0
|
CB
|
E:ASP116
|
4.6
|
27.6
|
1.0
|
CD2
|
E:LEU113
|
4.8
|
31.7
|
1.0
|
O
|
E:ALA126
|
4.8
|
24.2
|
1.0
|
N
|
E:GLY117
|
4.9
|
27.7
|
1.0
|
C
|
E:GLY114
|
4.9
|
25.3
|
1.0
|
N
|
E:ASP116
|
4.9
|
25.7
|
1.0
|
|
Calcium binding site 6 out
of 14 in 4lw9
Go back to
Calcium Binding Sites List in 4lw9
Calcium binding site 6 out
of 14 in the Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Ca202
b:54.8
occ:1.00
|
O
|
F:GLY125
|
2.3
|
53.4
|
1.0
|
O
|
F:GLN118
|
2.3
|
57.3
|
1.0
|
O
|
F:GLY120
|
2.3
|
59.6
|
1.0
|
O
|
F:LEU113
|
2.3
|
49.8
|
1.0
|
OD1
|
F:ASP127
|
2.5
|
44.8
|
1.0
|
OD1
|
F:ASP116
|
2.5
|
61.2
|
1.0
|
C
|
F:LEU113
|
3.4
|
47.0
|
1.0
|
CG
|
F:ASP116
|
3.4
|
61.2
|
1.0
|
C
|
F:GLY125
|
3.5
|
53.1
|
1.0
|
C
|
F:GLY120
|
3.5
|
61.2
|
1.0
|
C
|
F:GLN118
|
3.5
|
58.8
|
1.0
|
OD2
|
F:ASP116
|
3.6
|
61.5
|
1.0
|
CG
|
F:ASP127
|
3.7
|
45.0
|
1.0
|
N
|
F:GLN118
|
3.9
|
59.0
|
1.0
|
CA
|
F:LEU113
|
4.1
|
44.5
|
1.0
|
CA
|
F:GLY121
|
4.2
|
61.9
|
1.0
|
CA
|
F:GLY125
|
4.2
|
54.5
|
1.0
|
CB
|
F:LEU113
|
4.2
|
44.3
|
1.0
|
N
|
F:ASP127
|
4.2
|
44.7
|
1.0
|
OD2
|
F:ASP127
|
4.3
|
45.8
|
1.0
|
CA
|
F:GLN118
|
4.3
|
58.8
|
1.0
|
N
|
F:GLY121
|
4.3
|
61.7
|
1.0
|
C
|
F:GLU119
|
4.3
|
60.3
|
1.0
|
C
|
F:ALA126
|
4.3
|
47.0
|
1.0
|
N
|
F:GLY120
|
4.4
|
60.6
|
1.0
|
O
|
F:GLU119
|
4.5
|
61.2
|
1.0
|
N
|
F:ALA126
|
4.5
|
51.1
|
1.0
|
N
|
F:GLY114
|
4.5
|
48.9
|
1.0
|
N
|
F:GLU119
|
4.5
|
59.4
|
1.0
|
CA
|
F:GLY120
|
4.6
|
60.8
|
1.0
|
CA
|
F:ALA126
|
4.6
|
49.4
|
1.0
|
CD1
|
F:LEU113
|
4.6
|
44.8
|
1.0
|
O
|
F:ALA126
|
4.6
|
46.9
|
1.0
|
CA
|
F:GLU119
|
4.7
|
59.8
|
1.0
|
CA
|
F:ASP127
|
4.7
|
42.9
|
1.0
|
CB
|
F:GLN118
|
4.7
|
59.0
|
1.0
|
N
|
F:GLY117
|
4.7
|
59.7
|
1.0
|
CA
|
F:GLY114
|
4.7
|
51.0
|
1.0
|
CB
|
F:ASP127
|
4.8
|
43.8
|
1.0
|
CB
|
F:ASP116
|
4.8
|
60.3
|
1.0
|
CG
|
F:LEU113
|
4.8
|
44.5
|
1.0
|
C
|
F:GLY117
|
4.9
|
59.2
|
1.0
|
|
Calcium binding site 7 out
of 14 in 4lw9
Go back to
Calcium Binding Sites List in 4lw9
Calcium binding site 7 out
of 14 in the Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Ca203
b:38.2
occ:1.00
|
N
|
A:GLY26
|
2.2
|
42.9
|
1.0
|
OD1
|
F:ASP61
|
2.3
|
41.2
|
1.0
|
CG
|
F:ASP61
|
3.0
|
41.5
|
1.0
|
OD2
|
F:ASP61
|
3.0
|
44.4
|
1.0
|
CA
|
A:GLY26
|
3.0
|
43.6
|
1.0
|
O
|
F:HOH325
|
4.1
|
36.9
|
1.0
|
OE1
|
A:GLU29
|
4.3
|
41.0
|
1.0
|
C
|
A:GLY26
|
4.4
|
43.8
|
1.0
|
CB
|
F:ASP61
|
4.4
|
40.7
|
1.0
|
O
|
A:HOH353
|
4.7
|
50.2
|
1.0
|
O
|
A:GLY26
|
4.8
|
42.8
|
1.0
|
N
|
F:ASP61
|
4.9
|
36.7
|
1.0
|
CA
|
F:ASP61
|
5.0
|
39.2
|
1.0
|
CG2
|
F:THR60
|
5.0
|
32.5
|
1.0
|
|
Calcium binding site 8 out
of 14 in 4lw9
Go back to
Calcium Binding Sites List in 4lw9
Calcium binding site 8 out
of 14 in the Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Ca204
b:45.1
occ:1.00
|
O
|
I:GLY125
|
2.3
|
43.2
|
1.0
|
OD1
|
I:ASP127
|
2.3
|
41.1
|
1.0
|
O
|
I:GLN118
|
2.3
|
49.4
|
1.0
|
O
|
I:LEU113
|
2.3
|
43.2
|
1.0
|
O
|
I:GLY120
|
2.3
|
50.9
|
1.0
|
OD1
|
I:ASP116
|
2.5
|
52.8
|
1.0
|
OD2
|
I:ASP116
|
3.2
|
52.7
|
1.0
|
CG
|
I:ASP116
|
3.2
|
52.9
|
1.0
|
C
|
I:LEU113
|
3.4
|
41.1
|
1.0
|
CG
|
I:ASP127
|
3.5
|
39.3
|
1.0
|
C
|
I:GLY125
|
3.5
|
43.2
|
1.0
|
C
|
I:GLY120
|
3.5
|
53.3
|
1.0
|
C
|
I:GLN118
|
3.5
|
52.5
|
1.0
|
N
|
I:GLY120
|
3.9
|
54.1
|
1.0
|
C
|
I:GLU119
|
4.0
|
54.5
|
1.0
|
N
|
I:ASP127
|
4.1
|
37.8
|
1.0
|
CA
|
I:LEU113
|
4.1
|
39.0
|
1.0
|
OD2
|
I:ASP127
|
4.1
|
39.2
|
1.0
|
N
|
I:GLN118
|
4.2
|
53.1
|
1.0
|
CB
|
I:LEU113
|
4.2
|
40.1
|
1.0
|
C
|
I:ALA126
|
4.2
|
39.3
|
1.0
|
CA
|
I:GLY120
|
4.3
|
53.5
|
1.0
|
CA
|
I:GLY125
|
4.3
|
45.3
|
1.0
|
O
|
I:GLU119
|
4.3
|
56.0
|
1.0
|
N
|
I:GLU119
|
4.4
|
52.9
|
1.0
|
CA
|
I:GLU119
|
4.4
|
53.5
|
1.0
|
CA
|
I:GLN118
|
4.5
|
53.3
|
1.0
|
N
|
I:GLY114
|
4.5
|
40.5
|
1.0
|
N
|
I:ALA126
|
4.5
|
41.5
|
1.0
|
CA
|
I:ASP127
|
4.5
|
37.0
|
1.0
|
N
|
I:GLY121
|
4.6
|
53.5
|
1.0
|
O
|
I:ALA126
|
4.6
|
40.5
|
1.0
|
CB
|
I:ASP127
|
4.6
|
38.0
|
1.0
|
CA
|
I:ALA126
|
4.7
|
40.8
|
1.0
|
CB
|
I:ASP116
|
4.7
|
52.6
|
1.0
|
CA
|
I:GLY114
|
4.7
|
41.8
|
1.0
|
CA
|
I:GLY121
|
4.8
|
54.0
|
1.0
|
N
|
I:GLY117
|
4.9
|
53.0
|
1.0
|
N
|
I:ASP116
|
5.0
|
51.0
|
1.0
|
|
Calcium binding site 9 out
of 14 in 4lw9
Go back to
Calcium Binding Sites List in 4lw9
Calcium binding site 9 out
of 14 in the Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Ca203
b:28.5
occ:1.00
|
O
|
J:LEU113
|
2.3
|
26.2
|
1.0
|
OD1
|
J:ASP127
|
2.3
|
27.9
|
1.0
|
O
|
J:GLY125
|
2.3
|
27.0
|
1.0
|
O
|
J:GLN118
|
2.3
|
32.9
|
1.0
|
O
|
J:GLY120
|
2.3
|
31.9
|
1.0
|
OD1
|
J:ASP116
|
2.5
|
31.3
|
1.0
|
CG
|
J:ASP116
|
3.3
|
33.1
|
1.0
|
OD2
|
J:ASP116
|
3.4
|
34.5
|
1.0
|
C
|
J:LEU113
|
3.4
|
25.0
|
1.0
|
C
|
J:GLY125
|
3.5
|
29.3
|
1.0
|
CG
|
J:ASP127
|
3.5
|
29.2
|
1.0
|
C
|
J:GLY120
|
3.5
|
34.7
|
1.0
|
C
|
J:GLN118
|
3.5
|
35.0
|
1.0
|
N
|
J:GLY120
|
4.0
|
35.6
|
1.0
|
C
|
J:GLU119
|
4.1
|
36.5
|
1.0
|
N
|
J:GLN118
|
4.1
|
33.7
|
1.0
|
CA
|
J:LEU113
|
4.1
|
26.8
|
1.0
|
N
|
J:ASP127
|
4.2
|
23.3
|
1.0
|
OD2
|
J:ASP127
|
4.2
|
27.7
|
1.0
|
CA
|
J:GLY125
|
4.2
|
31.1
|
1.0
|
CA
|
J:GLY120
|
4.3
|
34.6
|
1.0
|
C
|
J:ALA126
|
4.3
|
25.2
|
1.0
|
CB
|
J:LEU113
|
4.3
|
28.4
|
1.0
|
N
|
J:GLU119
|
4.4
|
35.2
|
1.0
|
N
|
J:GLY114
|
4.4
|
25.2
|
1.0
|
CA
|
J:GLN118
|
4.4
|
34.7
|
1.0
|
CA
|
J:GLU119
|
4.5
|
37.5
|
1.0
|
N
|
J:ALA126
|
4.5
|
28.8
|
1.0
|
CA
|
J:ASP127
|
4.5
|
25.1
|
1.0
|
O
|
J:GLU119
|
4.5
|
36.0
|
1.0
|
N
|
J:GLY121
|
4.5
|
35.4
|
1.0
|
CA
|
J:GLY114
|
4.6
|
25.1
|
1.0
|
O
|
J:HOH329
|
4.6
|
35.9
|
1.0
|
CB
|
J:ASP127
|
4.6
|
25.8
|
1.0
|
O
|
J:ALA126
|
4.6
|
25.7
|
1.0
|
CA
|
J:GLY121
|
4.7
|
38.2
|
1.0
|
CA
|
J:ALA126
|
4.7
|
27.5
|
1.0
|
CB
|
J:ASP116
|
4.8
|
32.8
|
1.0
|
N
|
J:GLY117
|
4.8
|
31.8
|
1.0
|
C
|
J:GLY114
|
4.9
|
27.4
|
1.0
|
CD2
|
J:LEU113
|
4.9
|
31.7
|
1.0
|
N
|
J:ASP116
|
5.0
|
32.3
|
1.0
|
|
Calcium binding site 10 out
of 14 in 4lw9
Go back to
Calcium Binding Sites List in 4lw9
Calcium binding site 10 out
of 14 in the Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
K:Ca206
b:44.5
occ:1.00
|
O
|
K:LEU113
|
2.2
|
38.5
|
1.0
|
O
|
K:GLY120
|
2.3
|
49.2
|
1.0
|
O
|
K:GLY125
|
2.3
|
40.7
|
1.0
|
OD1
|
K:ASP127
|
2.3
|
42.9
|
1.0
|
O
|
K:GLN118
|
2.5
|
52.9
|
1.0
|
OD1
|
K:ASP116
|
2.6
|
49.7
|
1.0
|
OD2
|
K:ASP116
|
3.3
|
49.1
|
1.0
|
CG
|
K:ASP116
|
3.3
|
48.4
|
1.0
|
C
|
K:LEU113
|
3.3
|
37.8
|
1.0
|
CG
|
K:ASP127
|
3.5
|
41.5
|
1.0
|
C
|
K:GLY120
|
3.5
|
51.7
|
1.0
|
C
|
K:GLY125
|
3.5
|
40.6
|
1.0
|
C
|
K:GLN118
|
3.7
|
52.5
|
1.0
|
CA
|
K:LEU113
|
4.0
|
37.3
|
1.0
|
N
|
K:GLY120
|
4.1
|
52.7
|
1.0
|
OD2
|
K:ASP127
|
4.1
|
42.9
|
1.0
|
C
|
K:GLU119
|
4.1
|
53.0
|
1.0
|
CB
|
K:LEU113
|
4.2
|
38.9
|
1.0
|
N
|
K:ASP127
|
4.2
|
38.4
|
1.0
|
C
|
K:ALA126
|
4.3
|
38.1
|
1.0
|
N
|
K:GLY114
|
4.3
|
36.9
|
1.0
|
CA
|
K:GLY125
|
4.4
|
41.2
|
1.0
|
N
|
K:GLN118
|
4.4
|
51.5
|
1.0
|
CA
|
K:GLY121
|
4.4
|
51.9
|
1.0
|
N
|
K:GLY121
|
4.4
|
51.8
|
1.0
|
CA
|
K:GLY120
|
4.4
|
51.9
|
1.0
|
CA
|
K:GLU119
|
4.4
|
53.0
|
1.0
|
O
|
K:GLU119
|
4.5
|
54.4
|
1.0
|
N
|
K:GLU119
|
4.5
|
52.4
|
1.0
|
N
|
K:ALA126
|
4.5
|
39.4
|
1.0
|
CA
|
K:GLY114
|
4.5
|
37.9
|
1.0
|
CA
|
K:ASP127
|
4.6
|
37.3
|
1.0
|
CB
|
K:ASP127
|
4.6
|
39.4
|
1.0
|
CA
|
K:ALA126
|
4.7
|
39.1
|
1.0
|
CA
|
K:GLN118
|
4.7
|
52.4
|
1.0
|
O
|
K:ALA126
|
4.7
|
35.8
|
1.0
|
CB
|
K:ASP116
|
4.7
|
47.4
|
1.0
|
CD1
|
K:LEU113
|
4.9
|
39.9
|
1.0
|
C
|
K:GLY114
|
4.9
|
38.2
|
1.0
|
|
Reference:
F.S.Vago,
K.Raghunathan,
J.C.Jens,
W.J.Wedemeyer,
M.Bagdasarian,
J.S.Brunzelle,
D.N.Arvidson.
Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg To Be Published.
Page generated: Sun Jul 14 09:48:32 2024
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