Calcium in PDB 4m7f: Crystal Structure of Tetrameric Fibrinogen-Like Recognition Domain of FIBCD1 with Bound Mannac

The structure of Crystal Structure of Tetrameric Fibrinogen-Like Recognition Domain of FIBCD1 with Bound Mannac, PDB code: 4m7f was solved by A.K.Shrive, T.J.Greenhough, U.Holmskov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	53.46 / 2.10
Space group	P 4
Cell size a, b, c (Å), α, β, γ (°)	119.540, 119.540, 44.260, 90.00, 90.00, 90.00
R / Rfree (%)	18.7 / 21.4

The binding sites of Calcium atom in the Crystal Structure of Tetrameric Fibrinogen-Like Recognition Domain of FIBCD1 with Bound Mannac (pdb code 4m7f). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Tetrameric Fibrinogen-Like Recognition Domain of FIBCD1 with Bound Mannac, PDB code: 4m7f:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of Tetrameric Fibrinogen-Like Recognition Domain of FIBCD1 with Bound Mannac


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Tetrameric Fibrinogen-Like Recognition Domain of FIBCD1 with Bound Mannac within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca501 b:20.3 occ:1.00 OD2 A:ASP393 2.3 22.0 1.0 OD2 A:ASP395 2.3 20.2 1.0 O A:ASN399 2.3 21.7 1.0 O A:HOH629 2.4 19.9 1.0 O A:HOH606 2.4 17.4 1.0 O A:SER397 2.5 24.0 1.0 OD1 A:ASP393 2.5 18.4 1.0 CG A:ASP393 2.7 20.0 1.0 CG A:ASP395 3.1 21.0 1.0 OD1 A:ASP395 3.3 20.4 1.0 C A:ASN399 3.4 24.6 1.0 C A:SER397 3.5 25.2 1.0 N A:SER397 3.9 23.1 1.0 N A:ASN399 4.1 27.7 1.0 CA A:SER397 4.1 24.2 1.0 O A:ASP395 4.2 19.8 1.0 CB A:ASP393 4.2 19.0 1.0 N A:ASN400 4.2 21.6 1.0 CA A:ASN400 4.3 19.4 1.0 CA A:ASN399 4.3 27.5 1.0 C A:GLU398 4.3 28.4 1.0 O A:HOH736 4.3 35.1 1.0 CB A:SER397 4.3 24.4 1.0 C A:ASP395 4.4 20.1 1.0 CB A:ASP395 4.4 19.3 1.0 N A:GLU398 4.5 26.9 1.0 N A:ASP395 4.5 17.0 1.0 O A:HOH657 4.7 23.7 1.0 O A:GLU398 4.7 28.4 1.0 CA A:ASP395 4.7 19.2 1.0 CA A:GLU398 4.8 29.0 1.0 OG A:SER397 5.0 26.7 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of Tetrameric Fibrinogen-Like Recognition Domain of FIBCD1 with Bound Mannac


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Tetrameric Fibrinogen-Like Recognition Domain of FIBCD1 with Bound Mannac within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca501 b:19.0 occ:1.00 OD2 B:ASP395 2.2 16.5 1.0 O B:HOH604 2.2 19.2 1.0 O B:ASN399 2.3 23.6 1.0 OD2 B:ASP393 2.4 21.6 1.0 O B:HOH680 2.5 24.5 1.0 O B:SER397 2.5 24.0 1.0 OD1 B:ASP393 2.5 17.0 1.0 CG B:ASP393 2.8 19.1 1.0 CG B:ASP395 3.1 18.2 1.0 OD1 B:ASP395 3.3 19.2 1.0 C B:ASN399 3.4 23.4 1.0 C B:SER397 3.5 26.1 1.0 N B:SER397 4.0 25.1 1.0 CA B:SER397 4.1 25.0 1.0 O B:ASP395 4.2 18.4 1.0 CA B:ASN400 4.2 19.7 1.0 N B:ASN399 4.2 26.2 1.0 N B:ASN400 4.2 21.7 1.0 C B:GLU398 4.3 27.4 1.0 CB B:ASP393 4.3 20.4 1.0 CB B:SER397 4.3 26.0 1.0 CA B:ASN399 4.4 26.1 1.0 O B:GLU398 4.4 28.1 1.0 CB B:ASP395 4.4 17.6 1.0 C B:ASP395 4.5 19.5 1.0 N B:GLU398 4.5 26.3 1.0 N B:ASP395 4.6 16.9 1.0 CA B:ASP395 4.7 18.1 1.0 CA B:GLU398 4.8 28.3 1.0 OG B:SER397 5.0 26.3 1.0

A.K.Shrive, J.B.Moeller, I.Burns, J.M.Paterson, A.J.Shaw, A.Schlosser, G.L.Sorensen, T.J.Greenhough, U.Holmskov. Crystal Structure of the Tetrameric Fibrinogen-Like Recognition Domain of Fibrinogen C Domain Containing 1 (FIBCD1) Protein. J.Biol.Chem. V. 289 2880 2014.
ISSN: ISSN 0021-9258
PubMed: 24293368
DOI: 10.1074/JBC.M113.520577