Calcium in PDB 4mbe: SAC3:SUS1:CDC31:NUP1 Complex

The structure of SAC3:SUS1:CDC31:NUP1 Complex, PDB code: 4mbe was solved by D.Jani, B.Meineke, M.Stewart, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.80 / 2.61
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	51.270, 62.399, 124.601, 90.00, 98.61, 90.00
R / Rfree (%)	20 / 23.6

The binding sites of Calcium atom in the SAC3:SUS1:CDC31:NUP1 Complex (pdb code 4mbe). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the SAC3:SUS1:CDC31:NUP1 Complex, PDB code: 4mbe:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the SAC3:SUS1:CDC31:NUP1 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of SAC3:SUS1:CDC31:NUP1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca201 b:86.8 occ:1.00 OD1 A:ASP37 2.4 84.7 1.0 O A:PHE39 2.5 61.2 1.0 OD1 A:ASP33 2.6 54.8 1.0 O A:HOH302 2.6 56.4 1.0 OD1 A:ASN35 2.8 0.2 1.0 CG A:ASP37 3.3 72.2 1.0 CB A:ASN35 3.5 82.1 1.0 CG A:ASN35 3.5 93.9 1.0 C A:PHE39 3.6 59.8 1.0 N A:ASN35 3.6 85.6 1.0 OD2 A:ASP37 3.6 73.3 1.0 CG A:ASP33 3.8 64.3 1.0 OE1 A:GLU44 3.8 74.4 1.0 N A:MET34 4.1 67.0 1.0 CA A:ASN35 4.1 83.3 1.0 CA A:ASP33 4.2 70.5 1.0 C A:ASP33 4.2 64.3 1.0 OE2 A:GLU44 4.2 86.3 1.0 N A:PHE39 4.3 56.6 1.0 CA A:PHE39 4.3 62.1 1.0 N A:ASN36 4.4 92.8 1.0 N A:ASP37 4.4 67.7 1.0 CD A:GLU44 4.4 73.2 1.0 N A:LEU40 4.6 48.0 1.0 CB A:PHE39 4.6 67.5 1.0 CB A:ASP33 4.6 67.2 1.0 C A:ASN35 4.6 85.9 1.0 CB A:ASP37 4.6 64.2 1.0 ND2 A:ASN35 4.7 98.7 1.0 C A:MET34 4.7 79.7 1.0 OD2 A:ASP33 4.7 65.5 1.0 CA A:LEU40 4.8 49.8 1.0 O A:ASP33 4.9 55.5 1.0 CA A:MET34 4.9 73.2 1.0

Calcium binding site 2 out of 4 in the SAC3:SUS1:CDC31:NUP1 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of SAC3:SUS1:CDC31:NUP1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca202 b:88.5 occ:1.00 O A:GLU148 2.4 98.6 1.0 OD1 A:ASP146 2.4 0.9 1.0 OD1 A:ASP142 2.5 79.8 1.0 OE2 A:GLU153 2.5 99.5 1.0 OE1 A:GLU153 2.7 96.4 1.0 CD A:GLU153 3.0 94.4 1.0 CG A:ASP146 3.3 0.6 1.0 CB A:ASP144 3.5 0.2 1.0 OD2 A:ASP146 3.5 0.3 1.0 C A:GLU148 3.6 95.4 1.0 CG A:ASP142 3.7 87.6 1.0 N A:ASP144 3.7 0.8 1.0 OD2 A:ASP144 3.7 0.9 1.0 CG A:ASP144 4.0 0.5 1.0 N A:LEU143 4.1 92.8 1.0 CA A:ASP144 4.1 1.0 1.0 N A:ASN150 4.3 87.5 1.0 CA A:ASP142 4.3 82.5 1.0 CA A:ILE149 4.3 79.9 1.0 N A:ILE149 4.4 90.4 1.0 OD1 A:ASN150 4.4 98.9 1.0 CG A:GLU153 4.5 83.4 1.0 OD2 A:ASP142 4.5 92.8 1.0 CB A:ASP142 4.5 84.6 1.0 N A:GLY145 4.5 99.5 1.0 C A:ASP142 4.5 88.7 1.0 N A:GLU148 4.6 95.6 1.0 N A:ASP146 4.6 96.8 1.0 CA A:GLU148 4.7 96.1 1.0 CB A:ASP146 4.7 0.2 1.0 C A:ASP144 4.8 0.1 1.0 C A:ILE149 4.8 80.3 1.0 C A:LEU143 4.8 0.4 1.0 CA A:LEU143 5.0 98.9 1.0 NZ A:LYS112 5.0 0.1 1.0

Calcium binding site 3 out of 4 in the SAC3:SUS1:CDC31:NUP1 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of SAC3:SUS1:CDC31:NUP1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca201 b:87.4 occ:1.00 OD1 D:ASP142 2.3 88.0 1.0 O D:GLU148 2.4 85.2 1.0 OD1 D:ASP146 2.4 99.2 1.0 OE2 D:GLU153 2.8 72.4 1.0 OE1 D:GLU153 3.0 79.5 1.0 CB D:ASP144 3.1 98.8 1.0 CD D:GLU153 3.3 78.0 1.0 CG D:ASP146 3.4 94.3 1.0 OD2 D:ASP144 3.4 0.0 1.0 CG D:ASP142 3.5 91.3 1.0 C D:GLU148 3.6 87.0 1.0 N D:ASP144 3.6 0.7 1.0 CG D:ASP144 3.7 0.3 1.0 OD2 D:ASP146 3.7 89.3 1.0 CA D:ASP144 3.9 0.7 1.0 OD2 D:ASP142 4.3 93.2 1.0 N D:GLY145 4.3 97.1 1.0 N D:LEU143 4.3 91.1 1.0 CA D:ASP142 4.4 92.5 1.0 N D:ASP146 4.4 0.4 1.0 N D:GLU148 4.4 93.0 1.0 CA D:ILE149 4.5 68.4 1.0 N D:ILE149 4.5 74.7 1.0 N D:ASN150 4.5 69.1 1.0 C D:ASP144 4.5 0.3 1.0 CB D:ASP142 4.5 94.0 1.0 CA D:GLU148 4.6 95.0 1.0 C D:ASP142 4.7 93.3 1.0 ND2 D:ASN150 4.7 81.5 1.0 CB D:ASP146 4.7 0.7 1.0 CG D:GLU153 4.8 75.4 1.0 C D:LEU143 4.8 98.2 1.0 OD1 D:ASP144 4.8 0.3 1.0 C D:ILE149 4.9 67.8 1.0

Calcium binding site 4 out of 4 in the SAC3:SUS1:CDC31:NUP1 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of SAC3:SUS1:CDC31:NUP1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca202 b:94.6 occ:1.00 O D:PHE39 2.5 49.5 1.0 OD1 D:ASP33 2.6 38.6 1.0 ND2 D:ASN35 2.9 96.8 1.0 OD1 D:ASP37 3.1 60.6 1.0 CG D:ASN35 3.1 90.0 1.0 CB D:ASN35 3.2 67.0 1.0 N D:ASN35 3.4 62.7 1.0 O D:HOH309 3.4 50.0 1.0 OE1 D:GLU44 3.6 59.6 1.0 C D:PHE39 3.7 39.8 1.0 CG D:ASP33 3.8 31.8 1.0 CA D:ASN35 3.9 61.7 1.0 OD1 D:ASN35 3.9 99.4 1.0 CG D:ASP37 3.9 58.8 1.0 N D:MET34 3.9 44.8 1.0 OE2 D:GLU44 4.0 68.1 1.0 CA D:ASP33 4.1 39.4 1.0 C D:ASP33 4.1 38.0 1.0 OD2 D:ASP37 4.1 65.0 1.0 CD D:GLU44 4.2 59.0 1.0 N D:PHE39 4.4 41.1 1.0 N D:ASN36 4.5 48.8 1.0 CA D:PHE39 4.5 43.4 1.0 CB D:ASP33 4.5 35.3 1.0 C D:MET34 4.5 48.7 1.0 C D:ASN35 4.6 57.0 1.0 N D:LEU40 4.6 39.5 1.0 CA D:LEU40 4.7 44.5 1.0 N D:ASP37 4.7 51.9 1.0 CA D:MET34 4.7 43.0 1.0 CB D:PHE39 4.8 46.0 1.0 OD2 D:ASP33 4.8 41.4 1.0 O D:ASP33 4.8 42.8 1.0 CD2 D:LEU40 4.8 44.6 1.0 O D:PHE32 4.9 37.6 1.0

D.Jani, E.Valkov, M.Stewart. Structural Basis For Binding the TREX2 Complex to Nuclear Pores, GAL1 Localisation and Mrna Export. Nucleic Acids Res. V. 42 6686 2014.
ISSN: ISSN 0305-1048
PubMed: 24705649
DOI: 10.1093/NAR/GKU252