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Calcium in PDB 4mc7: Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11)

Protein crystallography data

The structure of Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11), PDB code: 4mc7 was solved by H.Yang, P.J.Carney, J.C.Chang, Z.Guo, J.Stevens, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.84 / 2.99
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 123.374, 164.358, 214.912, 90.00, 90.00, 90.00
R / Rfree (%) 21.4 / 26

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11) (pdb code 4mc7). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 5 binding sites of Calcium where determined in the Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11), PDB code: 4mc7:
Jump to Calcium binding site number: 1; 2; 3; 4; 5;

Calcium binding site 1 out of 5 in 4mc7

Go back to Calcium Binding Sites List in 4mc7
Calcium binding site 1 out of 5 in the Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca502

b:64.1
occ:1.00
 O A:GLY331 2.3 75.4 1.0
O A:GLY329 2.3 96.4 1.0
O A:ASP285 2.4 46.5 1.0
O A:ASN281 2.6 52.9 1.0
OD2 A:ASP311 2.8 73.8 1.0
C A:GLY329 3.2 68.8 1.0
CG A:ASP311 3.4 87.0 1.0
C A:GLY331 3.5 86.6 1.0
C A:ASP285 3.6 53.8 1.0
C A:ASN281 3.8 59.6 1.0
CA A:GLY329 3.9 71.0 1.0
OD1 A:ASP311 3.9 64.0 1.0
CB A:ASP311 4.1 85.7 1.0
N A:GLU330 4.1 68.4 1.0
CA A:GLY332 4.1 63.0 1.0
C A:GLU330 4.2 84.5 1.0
CA A:ALA286 4.3 67.9 1.0
N A:GLY332 4.3 73.0 1.0
N A:GLY331 4.3 71.8 1.0
N A:ALA286 4.3 52.3 1.0
O A:GLU328 4.3 0.5 1.0
CA A:GLU330 4.4 81.9 1.0
CA A:LEU282 4.4 58.1 1.0
O A:GLU330 4.5 78.9 1.0
O A:PRO313 4.5 74.3 1.0
CA A:GLY331 4.6 72.7 1.0
N A:LEU282 4.6 52.7 1.0
CA A:ASP285 4.7 64.0 1.0
N A:ASP285 4.7 58.0 1.0
C A:LEU282 4.8 69.4 1.0
CA A:ASN281 4.9 48.0 1.0

Calcium binding site 2 out of 5 in 4mc7

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Calcium binding site 2 out of 5 in the Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca503

b:65.7
occ:1.00
 OD2 D:ASP160 2.1 0.2 1.0
OD2 A:ASP160 2.1 0.7 1.0
OD2 B:ASP160 2.1 0.1 1.0
OD2 C:ASP160 2.2 0.3 1.0
CG D:ASP160 3.2 0.1 1.0
CG B:ASP160 3.2 0.2 1.0
CG C:ASP160 3.3 0.1 1.0
CG A:ASP160 3.3 93.9 1.0
CB C:ASP160 3.8 97.1 1.0
CB B:ASP160 3.8 0.4 1.0
CB D:ASP160 3.9 91.0 1.0
CB A:ASP160 4.0 88.8 1.0
OD1 D:ASP160 4.2 0.8 1.0
OD1 A:ASP160 4.2 0.3 1.0
OD1 B:ASP160 4.3 0.7 1.0
OD1 C:ASP160 4.3 0.1 1.0

Calcium binding site 3 out of 5 in 4mc7

Go back to Calcium Binding Sites List in 4mc7
Calcium binding site 3 out of 5 in the Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca502

b:43.0
occ:1.00
 O B:GLY331 2.3 68.4 1.0
O B:GLY329 2.4 78.8 1.0
O B:ASN281 2.6 62.2 1.0
O B:ASP285 2.6 52.1 1.0
OD2 B:ASP311 2.8 62.6 1.0
CG B:ASP311 3.3 61.4 1.0
C B:GLY329 3.4 48.5 1.0
C B:GLY331 3.4 63.2 1.0
C B:ASP285 3.7 44.5 1.0
OD1 B:ASP311 3.8 50.0 1.0
C B:ASN281 3.8 58.7 1.0
CA B:GLY332 4.0 53.6 1.0
CB B:ASP311 4.1 64.0 1.0
C B:GLU330 4.1 50.9 1.0
CA B:GLY329 4.1 48.4 1.0
N B:GLY332 4.2 55.5 1.0
N B:GLU330 4.2 45.2 1.0
N B:GLY331 4.3 48.5 1.0
CA B:LEU282 4.4 51.9 1.0
O B:GLU330 4.4 48.2 1.0
CA B:GLU330 4.4 52.2 1.0
CA B:ALA286 4.4 51.9 1.0
O B:GLU328 4.4 61.3 1.0
N B:ALA286 4.5 44.0 1.0
CA B:GLY331 4.5 66.3 1.0
O B:PRO313 4.5 61.0 1.0
N B:LEU282 4.6 42.7 1.0
C B:LEU282 4.7 52.3 1.0
N B:ASP285 4.8 61.8 1.0
CA B:ASP285 4.8 52.6 1.0
CA B:ASN281 4.9 56.1 1.0

Calcium binding site 4 out of 5 in 4mc7

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Calcium binding site 4 out of 5 in the Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca502

b:63.0
occ:1.00
 O C:GLY329 2.3 0.3 1.0
O C:ASN281 2.4 70.7 1.0
O C:GLY331 2.4 0.2 1.0
O C:ASP285 2.4 78.0 1.0
OD2 C:ASP311 2.7 73.1 1.0
C C:GLY329 3.3 0.3 1.0
CG C:ASP311 3.4 75.0 1.0
C C:ASP285 3.6 90.4 1.0
C C:ASN281 3.6 76.9 1.0
C C:GLY331 3.6 0.4 1.0
OD1 C:ASP311 4.0 67.5 1.0
CA C:GLY329 4.0 0.0 1.0
N C:GLU330 4.2 87.2 1.0
CB C:ASP311 4.2 78.2 1.0
CA C:LEU282 4.2 75.3 1.0
C C:GLU330 4.2 91.5 1.0
CA C:GLY332 4.2 87.4 1.0
N C:ALA286 4.3 82.7 1.0
CA C:ALA286 4.3 87.3 1.0
N C:GLY331 4.3 92.1 1.0
N C:LEU282 4.4 66.0 1.0
CA C:GLU330 4.4 90.4 1.0
N C:GLY332 4.4 95.1 1.0
O C:GLU328 4.5 0.6 1.0
O C:GLU330 4.5 99.7 1.0
C C:LEU282 4.6 80.7 1.0
N C:ASP285 4.6 96.7 1.0
CA C:ASP285 4.6 91.8 1.0
CA C:GLY331 4.6 0.3 1.0
CA C:ASN281 4.7 77.9 1.0
O C:PRO313 4.7 93.4 1.0
N C:TRP283 4.8 77.1 1.0
CB C:ASN281 4.9 83.5 1.0
N C:ASN281 4.9 91.1 1.0

Calcium binding site 5 out of 5 in 4mc7

Go back to Calcium Binding Sites List in 4mc7
Calcium binding site 5 out of 5 in the Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of A Subtype N11 Neuraminidase-Like Protein of A/Flat-Faced Bat/Peru/033/2010 (H18N11) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca502

b:68.2
occ:1.00
 O D:GLY331 2.4 99.8 1.0
O D:GLY329 2.4 99.3 1.0
O D:ASP285 2.5 78.9 1.0
O D:ASN281 2.7 69.5 1.0
OD2 D:ASP311 2.8 92.7 1.0
C D:GLY329 3.3 85.9 1.0
CG D:ASP311 3.3 84.9 1.0
C D:GLY331 3.6 0.1 1.0
C D:ASP285 3.6 86.2 1.0
C D:ASN281 3.9 74.8 1.0
OD1 D:ASP311 4.0 67.2 1.0
CB D:ASP311 4.0 76.6 1.0
CA D:GLY329 4.0 85.7 1.0
CA D:GLY332 4.2 93.7 1.0
CA D:ALA286 4.2 91.3 1.0
N D:GLU330 4.2 77.2 1.0
C D:GLU330 4.2 95.9 1.0
N D:ALA286 4.3 83.1 1.0
N D:GLY332 4.3 96.4 1.0
O D:GLU328 4.3 0.8 1.0
N D:GLY331 4.4 0.8 1.0
O D:PRO313 4.4 86.3 1.0
CA D:GLU330 4.5 78.9 1.0
CA D:LEU282 4.5 74.1 1.0
O D:GLU330 4.5 0.1 1.0
CA D:GLY331 4.6 0.6 1.0
N D:LEU282 4.6 72.9 1.0
CA D:ASP285 4.7 89.2 1.0
N D:ASP285 4.8 87.6 1.0
C D:LEU282 4.8 80.3 1.0
CA D:ASN281 4.9 78.3 1.0

Reference:

S.Tong, X.Zhu, Y.Li, M.Shi, J.Zhang, M.Bourgeois, H.Yang, X.Chen, S.Recuenco, J.Gomez, L.M.Chen, A.Johnson, Y.Tao, C.Dreyfus, W.Yu, R.Mcbride, P.J.Carney, A.T.Gilbert, J.Chang, Z.Guo, C.T.Davis, J.C.Paulson, J.Stevens, C.E.Rupprecht, E.C.Holmes, I.A.Wilson, R.O.Donis. New World Bats Harbor Diverse Influenza A Viruses. Plos Pathog. V. 9 03657 2013.
ISSN: ISSN 1553-7366
PubMed: 24130481
DOI: 10.1371/JOURNAL.PPAT.1003657
Page generated: Sun Jul 14 10:19:40 2024

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