Calcium in PDB 4mix: Patoxg Glycosyltransferase

The structure of Patoxg Glycosyltransferase, PDB code: 4mix was solved by X.Bogdanovic, C.Wirth, C.Hunte, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	56.92 / 1.80
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	145.817, 42.127, 116.367, 90.00, 99.52, 90.00
R / Rfree (%)	22.2 / 26.3

The binding sites of Calcium atom in the Patoxg Glycosyltransferase (pdb code 4mix). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Patoxg Glycosyltransferase, PDB code: 4mix:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Patoxg Glycosyltransferase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Patoxg Glycosyltransferase within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca2501 b:69.3 occ:1.00 O1A A:UD12502 2.3 34.9 1.0 O A:HOH2664 2.4 43.1 1.0 O2B A:UD12502 2.7 44.7 1.0 OD2 A:ASP2276 2.7 45.5 1.0 OD2 A:ASP2278 2.9 45.3 1.0 OD1 A:ASP2278 3.0 39.0 1.0 CG A:ASP2278 3.3 39.0 1.0 PA A:UD12502 3.6 32.3 1.0 PB A:UD12502 3.8 40.5 1.0 O3A A:UD12502 3.8 35.1 1.0 CG A:ASP2276 3.9 40.6 1.0 O A:HOH2666 4.2 32.6 1.0 O3B A:UD12502 4.3 26.1 1.0 O1' A:UD12502 4.3 38.1 1.0 O5B A:UD12502 4.5 28.5 1.0 C5B A:UD12502 4.5 24.9 1.0 CB A:ASP2276 4.5 36.1 1.0 O A:HOH2663 4.7 35.8 1.0 O2A A:UD12502 4.8 36.4 1.0 CB A:ASP2278 4.8 36.0 1.0 OD1 A:ASP2276 4.8 41.5 1.0 C3B A:UD12502 4.9 24.9 1.0 OD1 A:ASP2279 4.9 42.5 1.0

Calcium binding site 2 out of 2 in the Patoxg Glycosyltransferase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Patoxg Glycosyltransferase within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca2502 b:79.3 occ:1.00 O1A B:UD12501 2.6 37.3 1.0 O B:HOH2704 2.8 45.1 1.0 OD2 B:ASP2276 2.8 54.8 1.0 OD2 B:ASP2278 3.0 54.7 1.0 OD1 B:ASP2278 3.1 51.4 1.0 O1B B:UD12501 3.1 39.5 1.0 CG B:ASP2278 3.4 48.8 1.0 CG B:ASP2276 3.6 49.3 1.0 PA B:UD12501 4.0 33.9 1.0 CB B:ASP2276 4.1 42.4 1.0 PB B:UD12501 4.2 38.9 1.0 O3A B:UD12501 4.2 36.5 1.0 OD1 B:ASP2276 4.4 52.0 1.0 O3B B:UD12501 4.4 24.9 1.0 O1' B:UD12501 4.5 37.6 1.0 O B:HOH2618 4.6 27.9 1.0 O5B B:UD12501 4.8 32.2 1.0 C5B B:UD12501 4.9 27.7 1.0 CB B:ASP2278 4.9 44.4 1.0

T.Jank, X.Bogdanovic, C.Wirth, E.Haaf, M.Spoerner, K.E.Bohmer, M.Steinemann, J.H.Orth, H.R.Kalbitzer, B.Warscheid, C.Hunte, K.Aktories. A Bacterial Toxin Catalyzing Tyrosine Glycosylation of Rho and Deamidation of Gq and Gi Proteins. Nat.Struct.Mol.Biol. V. 20 1273 2013.
ISSN: ISSN 1545-9993
PubMed: 24141704
DOI: 10.1038/NSMB.2688