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Calcium in PDB 4mwx: Shanghai N9-Zanamivir

Protein crystallography data

The structure of Shanghai N9-Zanamivir, PDB code: 4mwx was solved by Y.Wu, J.X.Qi, F.Gao, G.F.Gao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.77 / 1.80
Space group I 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 181.453, 181.453, 181.453, 90.00, 90.00, 90.00
R / Rfree (%) 13.7 / 15.7

Calcium Binding Sites:

The binding sites of Calcium atom in the Shanghai N9-Zanamivir (pdb code 4mwx). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Shanghai N9-Zanamivir, PDB code: 4mwx:

Calcium binding site 1 out of 1 in 4mwx

Go back to Calcium Binding Sites List in 4mwx
Calcium binding site 1 out of 1 in the Shanghai N9-Zanamivir


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Shanghai N9-Zanamivir within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca512

b:22.2
occ:1.00
O A:HOH632 2.5 15.8 1.0
O A:HOH641 2.5 12.5 1.0
OD2 A:ASP326 2.5 19.3 1.0
O A:ASP295 2.6 11.0 1.0
O A:ASN348 2.6 11.4 1.0
O A:GLY299 2.6 16.8 1.0
CG A:ASP326 3.4 16.8 1.0
C A:ASN348 3.7 17.2 1.0
C A:ASP295 3.8 13.9 1.0
C A:GLY299 3.8 18.9 1.0
O A:HOH909 3.8 27.5 1.0
CA A:GLY349 3.8 12.2 1.0
O A:HOH637 4.1 12.5 1.0
CA A:ASN296 4.2 10.2 1.0
OD1 A:ASP326 4.2 11.1 1.0
CB A:ASP326 4.2 11.4 1.0
N A:GLY349 4.2 10.6 1.0
C A:ASN296 4.4 17.8 1.0
O A:ASN296 4.4 17.5 1.0
N A:ASN296 4.5 12.1 1.0
N A:GLY299 4.5 13.8 1.0
CA A:SER300 4.5 10.0 1.0
N A:SER300 4.6 13.3 1.0
OG A:SER300 4.6 17.8 1.0
CA A:GLY299 4.7 13.0 1.0
O A:ASN345 4.8 18.1 1.0
CA A:ASP295 4.8 11.2 1.0
N A:ASN348 4.9 15.1 1.0
N A:ASP295 4.9 10.6 1.0
CA A:ASN348 4.9 14.4 1.0
CG A:LYS294 4.9 22.1 1.0
O A:PRO328 5.0 14.5 1.0

Reference:

Y.Wu, Y.H.Bi, C.J.Vavricka, X.M.Sun, Y.F.Zhang, F.Gao, M.Zhao, H.X.Xiao, C.F.Qin, J.H.He, W.J.Liu, J.H.Yan, J.X.Qi, G.F.Gao. Characterization of Two Distinct Neuraminidases From Avian-Origin Human-Infecting H7N9 Influenza Viruses Cell Res. V. 23 1347 2013.
ISSN: ISSN 1001-0602
PubMed: 24165891
DOI: 10.1038/CR.2013.144
Page generated: Sun Jul 14 10:38:32 2024

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