Calcium in PDB 4mwy: Shanghai N9-Laninamivir

Protein crystallography data

The structure of Shanghai N9-Laninamivir, PDB code: 4mwy was solved by Y.Wu, J.X.Qi, F.Gao, G.F.Gao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.78 / 1.80
Space group I 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 181.516, 181.516, 181.516, 90.00, 90.00, 90.00
R / Rfree (%) 13.7 / 15.4

Calcium Binding Sites:

The binding sites of Calcium atom in the Shanghai N9-Laninamivir (pdb code 4mwy). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Shanghai N9-Laninamivir, PDB code: 4mwy:

Calcium binding site 1 out of 1 in 4mwy

Go back to Calcium Binding Sites List in 4mwy
Calcium binding site 1 out of 1 in the Shanghai N9-Laninamivir


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Shanghai N9-Laninamivir within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca512

b:18.7
occ:1.00
O A:HOH638 2.5 14.5 1.0
OD2 A:ASP326 2.5 17.8 1.0
O A:HOH622 2.5 9.7 1.0
O A:ASP295 2.6 10.6 1.0
O A:GLY299 2.6 15.4 1.0
O A:ASN348 2.6 10.0 1.0
CG A:ASP326 3.5 14.6 1.0
C A:ASN348 3.7 16.6 1.0
C A:ASP295 3.8 11.4 1.0
C A:GLY299 3.8 17.5 1.0
O A:HOH869 3.8 23.7 1.0
CA A:GLY349 3.9 10.1 1.0
O A:HOH635 4.1 9.3 1.0
CA A:ASN296 4.2 8.6 1.0
OD1 A:ASP326 4.2 9.4 1.0
N A:GLY349 4.3 8.5 1.0
CB A:ASP326 4.3 9.6 1.0
C A:ASN296 4.4 14.9 1.0
O A:ASN296 4.5 15.8 1.0
N A:ASN296 4.5 8.9 1.0
N A:GLY299 4.5 12.3 1.0
CA A:SER300 4.5 8.4 1.0
N A:SER300 4.6 11.4 1.0
OG A:SER300 4.6 15.6 1.0
CA A:GLY299 4.7 12.9 1.0
O A:ASN345 4.7 15.1 1.0
CA A:ASP295 4.8 8.7 1.0
N A:ASN348 4.8 13.2 1.0
CA A:ASN348 4.9 12.9 1.0
N A:ASP295 4.9 8.6 1.0
CG A:LYS294 5.0 18.4 1.0
CB A:ASP295 5.0 9.6 1.0

Reference:

Y.Wu, Y.H.Bi, C.J.Vavricka, X.M.Sun, Y.F.Zhang, F.Gao, M.Zhao, H.X.Xiao, C.F.Qin, J.H.He, W.J.Liu, J.H.Yan, J.X.Qi, G.F.Gao. Characterization of Two Distinct Neuraminidases From Avian-Origin Human-Infecting H7N9 Influenza Viruses Cell Res. V. 23 1347 2013.
ISSN: ISSN 1001-0602
PubMed: 24165891
DOI: 10.1038/CR.2013.144
Page generated: Sat Dec 12 04:59:42 2020

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