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Calcium in PDB 4njb: Crystal Structure of the Complex of Lactoperoxidase From Bovine with 3,3-Oxydipyridine at 2.31 A Resolution

Enzymatic activity of Crystal Structure of the Complex of Lactoperoxidase From Bovine with 3,3-Oxydipyridine at 2.31 A Resolution

All present enzymatic activity of Crystal Structure of the Complex of Lactoperoxidase From Bovine with 3,3-Oxydipyridine at 2.31 A Resolution:
1.11.1.7;

Protein crystallography data

The structure of Crystal Structure of the Complex of Lactoperoxidase From Bovine with 3,3-Oxydipyridine at 2.31 A Resolution, PDB code: 4njb was solved by S.Yamini, H.V.Sirohi, M.Sinha, A.Bhushan, P.Kaur, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.02 / 2.31
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 54.361, 80.398, 76.284, 90.00, 103.37, 90.00
R / Rfree (%) 20.5 / 22.7

Other elements in 4njb:

The structure of Crystal Structure of the Complex of Lactoperoxidase From Bovine with 3,3-Oxydipyridine at 2.31 A Resolution also contains other interesting chemical elements:

Iodine (I) 11 atoms
Iron (Fe) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of the Complex of Lactoperoxidase From Bovine with 3,3-Oxydipyridine at 2.31 A Resolution (pdb code 4njb). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of the Complex of Lactoperoxidase From Bovine with 3,3-Oxydipyridine at 2.31 A Resolution, PDB code: 4njb:

Calcium binding site 1 out of 1 in 4njb

Go back to Calcium Binding Sites List in 4njb
Calcium binding site 1 out of 1 in the Crystal Structure of the Complex of Lactoperoxidase From Bovine with 3,3-Oxydipyridine at 2.31 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Complex of Lactoperoxidase From Bovine with 3,3-Oxydipyridine at 2.31 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca601

b:39.5
occ:1.00
 O A:ASP110 2.3 30.7 1.0
O A:PHE186 2.4 37.2 1.0
OD1 A:ASP110 2.5 51.9 1.0
O A:THR184 2.5 32.0 1.0
OG1 A:THR184 2.5 42.9 1.0
OD1 A:ASP188 2.6 42.7 1.0
OG A:SER190 2.6 38.3 1.0
C A:THR184 3.4 36.0 1.0
C A:ASP110 3.4 35.1 1.0
CG A:ASP188 3.4 42.6 1.0
CB A:SER190 3.5 38.5 1.0
C A:PHE186 3.6 38.4 1.0
CB A:THR184 3.7 42.0 1.0
CG A:ASP110 3.7 48.0 1.0
OD2 A:ASP188 3.8 44.9 1.0
CA A:THR184 3.8 39.5 1.0
N A:THR184 4.0 38.9 1.0
N A:ASP188 4.0 38.0 1.0
N A:PHE186 4.1 36.3 1.0
CA A:ASP110 4.2 38.9 1.0
N A:LEU111 4.3 34.5 1.0
N A:SER190 4.4 40.2 1.0
CA A:PHE186 4.4 37.7 1.0
N A:SER185 4.4 35.2 1.0
CA A:LEU111 4.4 32.4 1.0
C A:SER185 4.4 36.0 1.0
CB A:ASP110 4.5 43.5 1.0
O A:HOH716 4.6 32.8 1.0
N A:LEU187 4.6 36.2 1.0
CA A:SER190 4.6 39.7 1.0
OD2 A:ASP110 4.6 55.8 1.0
CB A:ASP188 4.7 37.2 1.0
CA A:LEU187 4.7 35.3 1.0
CD2 A:LEU111 4.8 23.8 1.0
CA A:ASP188 4.8 38.8 1.0
CA A:SER185 4.8 36.6 1.0
CG2 A:THR184 4.8 39.4 1.0
C A:LEU187 4.9 38.9 1.0
CG2 A:VAL183 4.9 32.4 1.0
C A:VAL183 4.9 31.8 1.0
O A:SER185 5.0 35.6 1.0

Reference:

S.Yamini, H.V.Sirohi, M.Sinha, A.Bhushan, P.Kaur, S.Sharma, T.P.Singh. Crystal Structure of the Complex of Lactoperoxidase From Bovine with 3,3-Oxydipyridine at 2.31 A Resolution To Be Published.
Page generated: Sun Jul 14 11:07:33 2024

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