Calcium in PDB 4nww: Crystal Structure of An N-Terminally Truncated Capsid Protein Mutant of Orsay Virus

The structure of Crystal Structure of An N-Terminally Truncated Capsid Protein Mutant of Orsay Virus, PDB code: 4nww was solved by Y.J.Tao, Y.R.Guo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 3.75
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	404.921, 375.148, 412.207, 90.00, 90.00, 90.00
R / Rfree (%)	29.9 / 30.1

The binding sites of Calcium atom in the Crystal Structure of An N-Terminally Truncated Capsid Protein Mutant of Orsay Virus (pdb code 4nww). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Crystal Structure of An N-Terminally Truncated Capsid Protein Mutant of Orsay Virus, PDB code: 4nww:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Crystal Structure of An N-Terminally Truncated Capsid Protein Mutant of Orsay Virus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of An N-Terminally Truncated Capsid Protein Mutant of Orsay Virus within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca401 b:49.5 occ:1.00 OE1 B:GLN92 2.3 45.8 1.0 OD1 A:ASP125 2.5 69.0 1.0 OD2 A:ASP122 2.6 41.6 1.0 OD2 A:ASP125 3.2 68.2 1.0 CG A:ASP125 3.2 74.2 1.0 OE1 B:GLU166 3.3 0.2 1.0 CD B:GLN92 3.4 44.3 1.0 CG A:ASP122 3.7 52.8 1.0 CD B:GLU166 3.8 0.8 1.0 CB B:GLU166 3.9 92.1 1.0 CG B:GLU166 4.2 0.9 1.0 CB A:ASP122 4.2 50.9 1.0 CG B:GLN92 4.2 44.1 1.0 NH2 A:ARG176 4.3 52.1 1.0 O B:GLN92 4.4 27.5 1.0 NE2 B:GLN92 4.4 45.0 1.0 OG1 B:THR165 4.4 60.9 1.0 OE2 B:GLU166 4.5 0.5 1.0 N B:GLU166 4.5 57.7 1.0 CB A:ASP125 4.6 73.1 1.0 CA B:GLN92 4.7 31.6 1.0 OD1 A:ASP122 4.7 43.1 1.0 CA B:GLU166 4.7 68.4 1.0 O B:GLU166 4.8 54.2 1.0 CD1 B:TYR164 5.0 49.3 1.0

Calcium binding site 2 out of 3 in the Crystal Structure of An N-Terminally Truncated Capsid Protein Mutant of Orsay Virus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of An N-Terminally Truncated Capsid Protein Mutant of Orsay Virus within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca401 b:40.0 occ:1.00 OE1 C:GLN92 2.6 51.5 1.0 OE1 C:GLU166 2.7 0.8 1.0 OD2 B:ASP125 2.9 74.6 1.0 OD2 B:ASP122 2.9 60.9 1.0 OD1 B:ASP125 2.9 66.0 1.0 CG B:ASP125 3.2 76.1 1.0 CD C:GLN92 3.4 61.0 1.0 CG B:ASP122 3.6 75.0 1.0 NE2 C:GLN92 3.6 67.1 1.0 OD1 B:ASP122 3.7 86.0 1.0 CD C:GLU166 3.9 0.0 1.0 CB C:GLU166 4.2 97.5 1.0 CD C:ARG213 4.2 0.7 1.0 NH2 B:ARG176 4.2 60.2 1.0 OG1 C:THR165 4.3 49.8 1.0 CG C:GLU166 4.5 0.4 1.0 CA C:GLN92 4.5 47.3 1.0 CB B:ASP125 4.6 67.0 1.0 CG C:GLN92 4.6 62.9 1.0 O C:GLN92 4.7 36.8 1.0 O C:PHE91 4.8 44.4 1.0 CB C:GLN92 4.8 54.1 1.0 NE C:ARG213 4.8 0.1 1.0 CB B:ASP122 4.9 79.2 1.0 OE2 C:GLU166 4.9 0.4 1.0 CG C:ARG213 5.0 0.1 1.0 N C:GLU166 5.0 65.7 1.0

Calcium binding site 3 out of 3 in the Crystal Structure of An N-Terminally Truncated Capsid Protein Mutant of Orsay Virus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of An N-Terminally Truncated Capsid Protein Mutant of Orsay Virus within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca401 b:55.4 occ:1.00 OD2 C:ASP125 2.7 67.7 1.0 OE1 A:GLN92 2.8 50.9 1.0 OD1 C:ASP125 2.8 79.7 1.0 OD1 C:ASP122 2.9 71.0 1.0 CG C:ASP125 3.1 71.1 1.0 OE1 A:GLU166 3.5 0.3 1.0 CD A:GLN92 3.6 55.5 1.0 CB A:GLU166 3.6 0.1 1.0 NE2 A:GLN92 3.9 63.5 1.0 CG C:ASP122 3.9 63.6 1.0 OG1 A:THR165 4.1 53.9 1.0 CB C:ASP122 4.1 59.3 1.0 O A:GLN92 4.1 30.9 1.0 N A:GLU166 4.2 49.7 1.0 CD A:GLU166 4.4 0.0 1.0 NE A:ARG213 4.4 0.2 1.0 CA A:GLU166 4.5 54.8 1.0 NH1 C:ARG176 4.6 48.0 1.0 CA A:GLN92 4.6 39.0 1.0 CG A:GLU166 4.6 0.9 1.0 CB C:ASP125 4.6 68.4 1.0 N A:THR165 4.6 45.8 1.0 O A:GLU166 4.7 47.7 1.0 CD1 A:TYR164 4.7 53.3 1.0 C A:THR165 4.8 47.8 1.0 C A:GLN92 4.8 35.7 1.0 CG A:GLN92 4.8 50.9 1.0 CB A:GLN92 4.9 43.6 1.0 CB A:TYR164 4.9 49.3 1.0 NH2 A:ARG213 4.9 99.6 1.0 C A:GLU166 5.0 45.7 1.0

Y.R.Guo, C.Hryc, J.Jakana, H.Jiang, D.Wang, W.Chiu, W.Zhong, Y.J.Tao. Crystal Structure of An N-Terminally Truncated Capsid Protein Mutant of Orsay Virus Proc.Natl.Acad.Sci.Usa 2014.
ISSN: ESSN 1091-6490