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Calcium in PDB 4oc2: X-Ray Structure of of Human Glutamate Carboxypeptidase II (Gcpii) in A Complex with Ceibzl, A Urea-Based Inhibitor N~2~-{[(1S)-1-Carboxybut- 3-Yn-1-Yl]Carbamoyl}-N~6~-(4-Iodobenzoyl)-L-Lysine
Enzymatic activity of X-Ray Structure of of Human Glutamate Carboxypeptidase II (Gcpii) in A Complex with Ceibzl, A Urea-Based Inhibitor N~2~-{[(1S)-1-Carboxybut- 3-Yn-1-Yl]Carbamoyl}-N~6~-(4-Iodobenzoyl)-L-Lysine
All present enzymatic activity of X-Ray Structure of of Human Glutamate Carboxypeptidase II (Gcpii) in A Complex with Ceibzl, A Urea-Based Inhibitor N~2~-{[(1S)-1-Carboxybut- 3-Yn-1-Yl]Carbamoyl}-N~6~-(4-Iodobenzoyl)-L-Lysine:
3.4.17.21;
3.4.17.21;
Protein crystallography data
The structure of X-Ray Structure of of Human Glutamate Carboxypeptidase II (Gcpii) in A Complex with Ceibzl, A Urea-Based Inhibitor N~2~-{[(1S)-1-Carboxybut- 3-Yn-1-Yl]Carbamoyl}-N~6~-(4-Iodobenzoyl)-L-Lysine, PDB code: 4oc2
was solved by
J.Pavlicek,
J.Ptacek,
J.Cerny,
Y.Byun,
L.Skultetyova,
M.Pomper,
J.Lubkowski,
C.Barinka,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 29.47 / 1.65 |
| Space group | I 2 2 2 |
| Cell size a, b, c (Å), α, β, γ (°) | 101.338, 130.247, 159.073, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 16.5 / 18.8 |
Other elements in 4oc2:
The structure of X-Ray Structure of of Human Glutamate Carboxypeptidase II (Gcpii) in A Complex with Ceibzl, A Urea-Based Inhibitor N~2~-{[(1S)-1-Carboxybut- 3-Yn-1-Yl]Carbamoyl}-N~6~-(4-Iodobenzoyl)-L-Lysine also contains other interesting chemical elements:
| Iodine | (I) | 1 atom |
| Chlorine | (Cl) | 1 atom |
| Zinc | (Zn) | 2 atoms |
Calcium Binding Sites:
The binding sites of Calcium atom in the X-Ray Structure of of Human Glutamate Carboxypeptidase II (Gcpii) in A Complex with Ceibzl, A Urea-Based Inhibitor N~2~-{[(1S)-1-Carboxybut- 3-Yn-1-Yl]Carbamoyl}-N~6~-(4-Iodobenzoyl)-L-Lysine
(pdb code 4oc2). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the X-Ray Structure of of Human Glutamate Carboxypeptidase II (Gcpii) in A Complex with Ceibzl, A Urea-Based Inhibitor N~2~-{[(1S)-1-Carboxybut- 3-Yn-1-Yl]Carbamoyl}-N~6~-(4-Iodobenzoyl)-L-Lysine, PDB code: 4oc2:
In total only one binding site of Calcium was determined in the X-Ray Structure of of Human Glutamate Carboxypeptidase II (Gcpii) in A Complex with Ceibzl, A Urea-Based Inhibitor N~2~-{[(1S)-1-Carboxybut- 3-Yn-1-Yl]Carbamoyl}-N~6~-(4-Iodobenzoyl)-L-Lysine, PDB code: 4oc2:
Calcium binding site 1 out of 1 in 4oc2
Go back to
Calcium Binding Sites List in 4oc2
Calcium binding site 1 out
of 1 in the X-Ray Structure of of Human Glutamate Carboxypeptidase II (Gcpii) in A Complex with Ceibzl, A Urea-Based Inhibitor N~2~-{[(1S)-1-Carboxybut- 3-Yn-1-Yl]Carbamoyl}-N~6~-(4-Iodobenzoyl)-L-Lysine
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of X-Ray Structure of of Human Glutamate Carboxypeptidase II (Gcpii) in A Complex with Ceibzl, A Urea-Based Inhibitor N~2~-{[(1S)-1-Carboxybut- 3-Yn-1-Yl]Carbamoyl}-N~6~-(4-Iodobenzoyl)-L-Lysine within 5.0Å range:
|
Reference:
J.Pavlicek,
J.Ptacek,
J.Cerny,
Y.Byun,
L.Skultetyova,
M.G.Pomper,
J.Lubkowski,
C.Barinka.
Structural Characterization of P1'-Diversified Urea-Based Inhibitors of Glutamate Carboxypeptidase II. Bioorg.Med.Chem.Lett. V. 24 2340 2014.
ISSN: ISSN 0960-894X
PubMed: 24731280
DOI: 10.1016/J.BMCL.2014.03.066
Page generated: Sun Jul 14 11:21:21 2024
ISSN: ISSN 0960-894X
PubMed: 24731280
DOI: 10.1016/J.BMCL.2014.03.066
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