Calcium in PDB 4olk: The Chap Domain of LYSGH15

The structure of The Chap Domain of LYSGH15, PDB code: 4olk was solved by J.Gu, S.Ouyang, Z.J.Liu, W.Han, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.85 / 2.69
Space group	P 62 2 2
Cell size a, b, c (Å), α, β, γ (°)	113.359, 113.359, 178.538, 90.00, 90.00, 120.00
R / Rfree (%)	17.4 / 20.4

The binding sites of Calcium atom in the The Chap Domain of LYSGH15 (pdb code 4olk). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the The Chap Domain of LYSGH15, PDB code: 4olk:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the The Chap Domain of LYSGH15


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Chap Domain of LYSGH15 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca201 b:47.4 occ:0.80 O A:TYR49 2.1 58.4 1.0 OD2 A:ASP56 2.3 51.2 1.0 O A:HIS51 2.3 26.6 1.0 OD1 A:ASP45 2.4 29.6 1.0 OD1 A:ASP47 2.4 42.7 1.0 C A:TYR49 3.1 52.8 1.0 O A:HOH309 3.2 26.0 1.0 CG A:ASP56 3.3 46.9 1.0 N A:TYR49 3.4 59.2 1.0 C A:HIS51 3.4 22.4 1.0 CG A:ASP47 3.4 34.2 1.0 CG A:ASP45 3.5 19.9 1.0 OD1 A:ASP56 3.6 58.4 1.0 N A:HIS51 3.7 22.6 1.0 OD2 A:ASP47 3.8 36.2 1.0 CA A:TYR49 3.8 62.3 1.0 C A:TYR50 3.9 28.2 1.0 N A:GLY48 4.0 42.0 1.0 CA A:HIS51 4.1 23.9 1.0 N A:TYR50 4.1 39.0 1.0 O A:TYR50 4.2 23.2 1.0 OD2 A:ASP45 4.2 23.6 1.0 OH A:TYR32 4.3 20.4 1.0 CG A:GLN53 4.3 21.1 1.0 N A:GLN53 4.4 12.2 1.0 C A:GLY48 4.4 46.9 1.0 CA A:ASP45 4.4 25.5 1.0 N A:ASP47 4.4 32.9 1.0 CB A:ASP45 4.4 13.2 1.0 CA A:TYR50 4.5 34.7 1.0 N A:ALA52 4.5 20.0 1.0 CB A:ASP56 4.6 37.4 1.0 CA A:GLY48 4.6 31.7 1.0 N A:ALA46 4.6 36.8 1.0 CB A:TYR50 4.7 34.0 1.0 CB A:GLN53 4.7 23.9 1.0 CB A:ASP47 4.7 26.4 1.0 CB A:TYR49 4.7 74.5 1.0 C A:ASP45 4.8 29.7 1.0 CA A:ALA52 4.8 18.7 1.0 C A:ASP47 4.9 42.0 1.0 CA A:ASP47 4.9 33.7 1.0

Calcium binding site 2 out of 2 in the The Chap Domain of LYSGH15


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The Chap Domain of LYSGH15 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca201 b:48.6 occ:0.80 OD2 B:ASP56 2.2 33.4 1.0 O B:TYR49 2.2 38.4 1.0 OD1 B:ASP45 2.2 33.7 1.0 OD1 B:ASP47 2.3 51.4 1.0 O B:HIS51 2.4 29.8 1.0 O B:HOH342 2.9 46.7 1.0 CG B:ASP56 3.1 43.5 1.0 C B:TYR49 3.2 41.5 1.0 CG B:ASP45 3.3 29.3 1.0 OD1 B:ASP56 3.3 62.8 1.0 N B:TYR49 3.5 42.4 1.0 CG B:ASP47 3.5 43.0 1.0 C B:HIS51 3.6 24.3 1.0 CA B:TYR49 3.9 47.1 1.0 OD2 B:ASP47 4.0 43.6 1.0 OD2 B:ASP45 4.0 27.7 1.0 N B:HIS51 4.1 27.2 1.0 OH B:TYR32 4.2 21.0 1.0 C B:TYR50 4.2 33.7 1.0 N B:GLY48 4.3 39.7 1.0 CA B:HIS51 4.3 21.4 1.0 CA B:ASP45 4.3 28.5 1.0 N B:TYR50 4.3 35.2 1.0 N B:ASP47 4.3 24.7 1.0 CB B:ASP45 4.3 22.8 1.0 CG B:GLN53 4.4 18.6 1.0 N B:GLN53 4.4 20.9 1.0 CB B:ASP56 4.4 28.5 1.0 N B:ALA46 4.5 37.7 1.0 O B:TYR50 4.5 31.4 1.0 C B:GLY48 4.5 33.5 1.0 N B:ALA52 4.6 27.4 1.0 C B:ASP45 4.7 34.5 1.0 CB B:ASP47 4.7 33.8 1.0 CB B:TYR49 4.7 66.2 1.0 CA B:TYR50 4.8 37.2 1.0 CA B:ALA52 4.8 21.5 1.0 C B:ASP47 4.8 34.7 1.0 CA B:ASP47 4.8 29.3 1.0 CB B:GLN53 4.8 17.9 1.0 CA B:GLY48 4.9 34.2 1.0

J.Gu, F.Feng, X.Feng, C.Sun, L.Lei, W.Ding, F.Niu, L.Jiao, M.Yang, Y.Li, X.Liu, J.Song, Z.Cui, D.Han, C.Du, Y.Yang, S.Ouyang, Z.Liu, W.Han. Structural and Biochemical Characterization Reveals LYSGH15 As An Unprecedented "Ef-Hand-Like" Calcium-Binding Phage Lysin Plos Pathog. V. 10 04109 2014.
ISSN: ISSN 1553-7366
DOI: 10.1371/JOURNAL.PPAT.1004109