Calcium in PDB 4onu: Camp-Binding Acyltransferase From Mycobacterium Smegmatis, E234A Mutant

Protein crystallography data

The structure of Camp-Binding Acyltransferase From Mycobacterium Smegmatis, E234A Mutant, PDB code: 4onu was solved by M.Podobnik, K.Rebolj, S.S.Visweswariah, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.25
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 38.318, 82.764, 105.969, 90.00, 90.00, 90.00
R / Rfree (%) 20 / 26.3

Calcium Binding Sites:

The binding sites of Calcium atom in the Camp-Binding Acyltransferase From Mycobacterium Smegmatis, E234A Mutant (pdb code 4onu). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Camp-Binding Acyltransferase From Mycobacterium Smegmatis, E234A Mutant, PDB code: 4onu:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 4onu

Go back to Calcium Binding Sites List in 4onu
Calcium binding site 1 out of 2 in the Camp-Binding Acyltransferase From Mycobacterium Smegmatis, E234A Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Camp-Binding Acyltransferase From Mycobacterium Smegmatis, E234A Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca401

b:33.2
occ:1.00
N A:ARG186 3.1 30.6 1.0
O A:HOH520 3.2 20.6 1.0
CD A:ARG186 3.4 42.0 1.0
NH1 A:ARG186 3.5 39.4 1.0
CB A:ASP92 3.6 30.7 1.0
CB A:ARG186 3.7 32.4 1.0
CA A:ARG186 4.0 32.9 1.0
CG A:ARG186 4.0 40.2 1.0
OD2 A:ASP92 4.0 34.0 1.0
C A:VAL185 4.1 33.0 1.0
NE A:ARG186 4.1 41.9 1.0
NH1 A:ARG112 4.1 26.8 1.0
CA A:VAL185 4.2 30.7 1.0
CZ A:ARG186 4.2 40.6 1.0
CG A:ASP92 4.2 32.0 1.0
O A:SER184 4.3 46.5 1.0
O A:ARG186 4.7 27.3 1.0
CG1 A:VAL185 4.8 31.2 1.0
C A:ARG186 4.9 29.7 1.0
O A:ARG91 4.9 33.1 1.0
CA A:ASP92 4.9 31.1 1.0
O A:HOH614 5.0 42.3 1.0

Calcium binding site 2 out of 2 in 4onu

Go back to Calcium Binding Sites List in 4onu
Calcium binding site 2 out of 2 in the Camp-Binding Acyltransferase From Mycobacterium Smegmatis, E234A Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Camp-Binding Acyltransferase From Mycobacterium Smegmatis, E234A Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca402

b:81.0
occ:1.00
O A:HOH538 2.6 47.5 1.0
CD1 A:LEU159 4.1 33.4 1.0
CD2 A:LEU214 4.2 62.8 1.0
CG2 A:ILE140 4.3 41.8 1.0
CB A:ALA137 4.3 36.1 1.0
CD A:PRO142 4.5 38.5 1.0
O A:ALA137 4.5 43.0 1.0
CD A:ARG156 4.5 37.9 1.0
O A:ILE140 4.5 45.6 1.0
CG A:PRO142 4.6 38.8 1.0
CA A:ALA137 4.6 40.0 1.0
CB A:ILE140 4.7 40.5 1.0
NE A:ARG156 4.7 36.2 1.0
O A:HOH579 4.9 55.9 1.0

Reference:

M.Podobnik, N.Siddiqui, K.Rebolj, S.Nambi, F.Merzel, S.S.Visweswariah. Allostery and Conformational Dynamics in Camp-Binding Acyltransferases. J.Biol.Chem. V. 289 16588 2014.
ISSN: ISSN 0021-9258
PubMed: 24748621
DOI: 10.1074/JBC.M114.560086
Page generated: Sat Dec 12 05:02:28 2020

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