Calcium in PDB 4ove: X-Ray Crystal Structure of Mouse Netrin-1

The structure of X-Ray Crystal Structure of Mouse Netrin-1, PDB code: 4ove was solved by M.Meier, D.Nikodemus, R.Reuten, T.R.Patel, G.Orriss, N.Okun, M.Koch, J.Stetefeld, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.64
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	69.754, 69.754, 334.802, 90.00, 90.00, 120.00
R / Rfree (%)	23 / 28.8

The structure of X-Ray Crystal Structure of Mouse Netrin-1 also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Calcium atom in the X-Ray Crystal Structure of Mouse Netrin-1 (pdb code 4ove). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the X-Ray Crystal Structure of Mouse Netrin-1, PDB code: 4ove:

Calcium binding site 1 out of 1 in the X-Ray Crystal Structure of Mouse Netrin-1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of X-Ray Crystal Structure of Mouse Netrin-1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca509 b:49.8 occ:1.00 O A:SER277 2.2 41.8 1.0 O A:HOH604 2.2 50.9 1.0 OG1 A:THR118 2.3 54.5 1.0 OD1 A:ASP110 2.3 45.1 1.0 O A:PHE107 2.4 47.1 1.0 O A:THR118 2.5 49.5 1.0 OD1 A:ASN112 2.9 61.9 1.0 CG A:ASP110 3.3 49.7 1.0 C A:SER277 3.3 44.1 1.0 C A:THR118 3.4 51.4 1.0 CB A:THR118 3.6 53.8 1.0 C A:PHE107 3.6 42.5 1.0 OD2 A:ASP110 3.6 51.6 1.0 CA A:THR118 3.8 53.6 1.0 N A:THR118 3.9 58.6 1.0 CG A:ASN112 3.9 69.2 1.0 CA A:SER277 4.0 45.2 1.0 CA A:PHE107 4.3 42.0 1.0 CB A:PHE107 4.4 43.8 1.0 N A:ASP278 4.4 44.6 1.0 CB A:SER277 4.4 46.5 1.0 N A:CYS119 4.5 52.6 1.0 O A:ASP110 4.5 51.4 1.0 CB A:ASN112 4.5 64.7 1.0 N A:LEU108 4.6 41.4 1.0 CG2 A:THR118 4.7 54.0 1.0 CA A:ASP278 4.7 45.9 1.0 CA A:ASN112 4.8 66.7 1.0 CB A:ASP110 4.8 49.6 1.0 O A:LEU111 4.8 70.2 1.0 ND2 A:ASN112 4.9 66.5 1.0 CA A:LEU108 4.9 43.5 1.0 CB A:ASP278 4.9 48.9 1.0 C A:LEU108 4.9 44.0 1.0 N A:ASP110 4.9 46.3 1.0 CA A:CYS119 4.9 56.6 1.0 OD1 A:ASP278 4.9 49.6 1.0 C A:ASP110 5.0 50.5 1.0

M.Meier, D.Nikodemus, R.Reuten, T.R.Patel, G.Orriss, N.Okun, K.Mceleney, F.Schneiders, K.Poole, M.Koch, J.Stetefeld. Dependence Receptor Recognition By Netrin-1 To Be Published.