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Calcium in PDB 4ovy: Crystal Structure of Haloacid Dehalogenase Domain Protein Hydrolase From Planctomyces Limnophilus Dsm 3776

Protein crystallography data

The structure of Crystal Structure of Haloacid Dehalogenase Domain Protein Hydrolase From Planctomyces Limnophilus Dsm 3776, PDB code: 4ovy was solved by C.Chang, M.Gu, M.Endres, A.Joachimiak, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.62 / 1.80
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 72.950, 75.502, 64.357, 90.00, 90.00, 90.00
R / Rfree (%) 13.1 / 17.5

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Haloacid Dehalogenase Domain Protein Hydrolase From Planctomyces Limnophilus Dsm 3776 (pdb code 4ovy). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Haloacid Dehalogenase Domain Protein Hydrolase From Planctomyces Limnophilus Dsm 3776, PDB code: 4ovy:

Calcium binding site 1 out of 1 in 4ovy

Go back to Calcium Binding Sites List in 4ovy
Calcium binding site 1 out of 1 in the Crystal Structure of Haloacid Dehalogenase Domain Protein Hydrolase From Planctomyces Limnophilus Dsm 3776


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Haloacid Dehalogenase Domain Protein Hydrolase From Planctomyces Limnophilus Dsm 3776 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca409

b:55.5
occ:1.00
O A:HOH662 2.1 35.5 1.0
OD2 A:ASP65 2.3 41.6 1.0
OD1 A:ASN257 2.4 23.4 1.0
O A:ASP67 2.5 22.2 1.0
O A:HOH733 2.8 53.2 1.0
CG A:ASP65 3.4 28.2 1.0
CG A:ASN257 3.4 20.7 1.0
C A:ASP67 3.6 19.4 1.0
ND2 A:ASN257 3.7 21.5 1.0
OG A:SER258 3.7 22.2 1.0
OE1 A:GLU73 3.9 24.0 1.0
OD2 A:ASP261 3.9 18.8 1.0
OD1 A:ASP65 4.0 27.1 1.0
CB A:SER258 4.2 19.8 1.0
CB A:ASP67 4.3 20.4 1.0
CB A:ASP65 4.3 22.5 1.0
O A:HOH634 4.4 29.8 1.0
CA A:ASP67 4.5 20.5 1.0
OG1 A:THR69 4.5 19.5 1.0
O A:HOH626 4.5 35.0 1.0
N A:GLY68 4.5 18.5 1.0
CD A:GLU73 4.6 23.1 1.0
OE2 A:GLU73 4.6 22.9 1.0
CA A:GLY68 4.6 18.8 1.0
O A:HOH692 4.6 66.7 1.0
N A:SER258 4.7 19.3 1.0
N A:ASP67 4.7 21.0 1.0
CB A:ASN257 4.7 20.4 1.0
CG A:ASP261 4.8 19.9 1.0
N A:ASN257 4.9 19.4 1.0
C A:GLY68 5.0 18.3 1.0
OD1 A:ASP261 5.0 20.4 1.0
O1 A:EDO407 5.0 39.9 1.0

Reference:

C.Chang, M.Gu, M.Endres, A.Joachimiak. Crystal Structure of Haloacid Dehalogenase Domain Protein Hydrolase From Planctomyces Limnophilus Dsm 3776 To Be Published.
Page generated: Wed Jul 9 01:11:09 2025

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