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Calcium in PDB 4p4d: X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Phosphoramidate Inhibitor MP1C

Enzymatic activity of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Phosphoramidate Inhibitor MP1C

All present enzymatic activity of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Phosphoramidate Inhibitor MP1C:
3.4.17.21;

Protein crystallography data

The structure of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Phosphoramidate Inhibitor MP1C, PDB code: 4p4d was solved by C.Barinka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.63 / 1.65
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 101.902, 130.079, 159.667, 90.00, 90.00, 90.00
R / Rfree (%) 15.7 / 17.4

Other elements in 4p4d:

The structure of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Phosphoramidate Inhibitor MP1C also contains other interesting chemical elements:

Zinc (Zn) 2 atoms
Chlorine (Cl) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Phosphoramidate Inhibitor MP1C (pdb code 4p4d). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Phosphoramidate Inhibitor MP1C, PDB code: 4p4d:

Calcium binding site 1 out of 1 in 4p4d

Go back to Calcium Binding Sites List in 4p4d
Calcium binding site 1 out of 1 in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Phosphoramidate Inhibitor MP1C


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Phosphoramidate Inhibitor MP1C within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca818

b:16.5
occ:1.00
 OE2 A:GLU436 2.3 16.7 1.0
O A:TYR272 2.4 15.8 1.0
O A:THR269 2.4 16.4 1.0
O A:HOH1023 2.4 16.3 1.0
OE1 A:GLU433 2.5 16.0 1.0
OG1 A:THR269 2.5 16.5 1.0
OE2 A:GLU433 2.5 16.4 1.0
CD A:GLU433 2.8 17.4 1.0
C A:THR269 3.3 15.9 1.0
CB A:THR269 3.3 16.2 1.0
CD A:GLU436 3.4 15.7 1.0
C A:TYR272 3.4 15.6 1.0
OE1 A:GLU436 3.9 15.5 1.0
CA A:THR269 3.9 16.5 1.0
N A:TYR272 4.0 15.4 1.0
CA A:PRO273 4.2 17.4 1.0
CB A:ASP266 4.2 17.6 1.0
N A:PRO270 4.3 16.1 1.0
N A:ALA274 4.3 17.6 1.0
N A:PRO273 4.3 16.5 1.0
CG A:GLU433 4.3 17.0 1.0
CA A:TYR272 4.4 16.6 1.0
CA A:PRO270 4.4 16.2 1.0
N A:ASP266 4.4 15.7 1.0
C A:PRO273 4.5 18.2 1.0
N A:GLY271 4.5 17.0 1.0
O A:ASP266 4.5 18.1 1.0
O A:ALA264 4.5 18.2 1.0
N A:THR269 4.6 16.1 1.0
CG A:GLU436 4.7 14.3 1.0
CG2 A:THR269 4.7 16.4 1.0
C A:PRO270 4.7 16.4 1.0
OD2 A:ASP266 4.8 18.5 1.0
CB A:GLU436 4.9 16.1 1.0
CA A:ASP266 4.9 16.0 1.0
CB A:ALA274 4.9 18.0 1.0
C A:GLY271 5.0 17.2 1.0
CA A:GLU433 5.0 14.6 1.0

Reference:

C.Barinka, C.Barinka. N/A N/A.
Page generated: Sun Jul 14 11:38:13 2024

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