Atomistry » Calcium » PDB 4opq-4p4f » 4p4f
Atomistry »
  Calcium »
    PDB 4opq-4p4f »
      4p4f »

Calcium in PDB 4p4f: X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Phosphoramidate Inhibitor Nc-2-40

Enzymatic activity of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Phosphoramidate Inhibitor Nc-2-40

All present enzymatic activity of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Phosphoramidate Inhibitor Nc-2-40:
3.4.17.21;

Protein crystallography data

The structure of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Phosphoramidate Inhibitor Nc-2-40, PDB code: 4p4f was solved by C.Barinka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.86
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 101.766, 130.612, 159.118, 90.00, 90.00, 90.00
R / Rfree (%) 15.2 / 17.6

Other elements in 4p4f:

The structure of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Phosphoramidate Inhibitor Nc-2-40 also contains other interesting chemical elements:

Zinc (Zn) 2 atoms
Chlorine (Cl) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Phosphoramidate Inhibitor Nc-2-40 (pdb code 4p4f). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Phosphoramidate Inhibitor Nc-2-40, PDB code: 4p4f:

Calcium binding site 1 out of 1 in 4p4f

Go back to Calcium Binding Sites List in 4p4f
Calcium binding site 1 out of 1 in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Phosphoramidate Inhibitor Nc-2-40


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Phosphoramidate Inhibitor Nc-2-40 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca818

b:17.9
occ:1.00
 OE2 A:GLU436 2.3 18.3 1.0
O A:TYR272 2.3 16.0 1.0
O A:THR269 2.4 16.8 1.0
OE1 A:GLU433 2.4 18.2 1.0
OG1 A:THR269 2.4 16.8 1.0
O A:HOH1015 2.4 18.1 1.0
OE2 A:GLU433 2.5 18.5 1.0
CD A:GLU433 2.8 17.1 1.0
CB A:THR269 3.3 17.0 1.0
C A:THR269 3.3 16.9 1.0
C A:TYR272 3.4 16.7 1.0
CD A:GLU436 3.4 15.5 1.0
OE1 A:GLU436 3.9 17.0 1.0
CA A:THR269 3.9 17.1 1.0
N A:TYR272 4.0 16.7 1.0
CA A:PRO273 4.1 18.0 1.0
N A:ALA274 4.2 18.3 1.0
N A:PRO273 4.2 17.6 1.0
N A:PRO270 4.3 16.9 1.0
CA A:TYR272 4.3 17.2 1.0
CG A:GLU433 4.3 18.0 1.0
CB A:ASP266 4.3 17.1 1.0
C A:PRO273 4.4 19.1 1.0
CA A:PRO270 4.5 17.5 1.0
N A:ASP266 4.5 17.5 1.0
N A:GLY271 4.5 18.6 1.0
O A:ASP266 4.5 19.1 1.0
O A:ALA264 4.6 19.2 1.0
N A:THR269 4.6 17.7 1.0
CG2 A:THR269 4.6 17.5 1.0
OD2 A:ASP266 4.7 18.9 1.0
CG A:GLU436 4.7 16.8 1.0
C A:PRO270 4.7 18.3 1.0
CB A:GLU436 4.9 17.7 1.0
CB A:ALA274 4.9 19.1 1.0
CA A:ASP266 5.0 17.0 1.0
CA A:GLU433 5.0 14.7 1.0
C A:GLY271 5.0 18.9 1.0

Reference:

C.Barinka, C.Barinka. N/A N/A.
Page generated: Sun Jul 14 11:38:46 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy