Calcium in PDB 4p99: CA2+-Stabilized Adhesin Helps An Antarctic Bacterium Reach Out and Bind Ice

The structure of CA2+-Stabilized Adhesin Helps An Antarctic Bacterium Reach Out and Bind Ice, PDB code: 4p99 was solved by S.Guo, D.R.T.Vance, R.L.Campbell, P.L.Davies, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.47 / 1.80
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	47.464, 47.469, 191.161, 90.04, 90.01, 90.02
R / Rfree (%)	22.1 / 25.7

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 105;

Binding sites:

The binding sites of Calcium atom in the CA2+-Stabilized Adhesin Helps An Antarctic Bacterium Reach Out and Bind Ice (pdb code 4p99). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 105 binding sites of Calcium where determined in the CA2+-Stabilized Adhesin Helps An Antarctic Bacterium Reach Out and Bind Ice, PDB code: 4p99:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 105 in the CA2+-Stabilized Adhesin Helps An Antarctic Bacterium Reach Out and Bind Ice


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of CA2+-Stabilized Adhesin Helps An Antarctic Bacterium Reach Out and Bind Ice within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca501 b:21.4 occ:1.00 O A:HOH894 2.2 31.5 0.5 O A:HOH711 2.3 16.1 1.0 OD1 A:ASP312 2.4 18.4 1.0 OD2 A:ASP399 2.5 23.8 1.0 O A:GLU314 2.5 30.6 0.5 O A:GLU314 2.5 30.6 0.5 OD2 A:ASP312 2.6 18.7 1.0 CG A:ASP312 2.8 18.2 1.0 O A:HOH940 2.9 44.7 1.0 O A:HOH894 3.2 31.5 0.5 CG A:ASP399 3.5 23.1 1.0 C A:GLU314 3.7 30.3 0.5 C A:GLU314 3.7 30.3 0.5 CB A:ASP399 3.8 22.6 1.0 O A:HOH822 4.3 31.2 1.0 ND2 A:ASN403 4.3 22.5 1.0 CB A:ASP312 4.4 17.7 1.0 CA A:ALA315 4.4 25.9 1.0 N A:ALA315 4.5 26.5 1.0 OD1 A:ASP399 4.5 23.4 1.0 N A:GLU314 4.6 34.1 0.5 N A:GLU314 4.6 34.1 0.5 OD2 A:ASP350 4.7 22.4 1.0 CA A:GLU314 4.7 31.9 0.5 CA A:GLU314 4.7 31.9 0.5

Calcium binding site 2 out of 105 in the CA2+-Stabilized Adhesin Helps An Antarctic Bacterium Reach Out and Bind Ice


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of CA2+-Stabilized Adhesin Helps An Antarctic Bacterium Reach Out and Bind Ice within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca502 b:17.5 occ:1.00 O A:HOH728 2.3 17.7 1.0 O A:THR308 2.3 16.8 1.0 OD2 A:ASP225 2.4 15.5 1.0 OD1 A:ASP225 2.5 15.2 1.0 O A:HOH695 2.5 9.3 1.0 O A:HOH696 2.6 14.2 1.0 O A:HOH782 2.7 25.1 1.0 CG A:ASP225 2.7 15.9 1.0 O A:HOH1008 2.9 30.0 1.0 C A:THR308 3.5 17.3 1.0 N A:THR308 4.1 17.1 1.0 CB A:ASP225 4.3 16.5 1.0 O A:HOH1026 4.3 50.6 1.0 OG A:SER307 4.4 11.9 1.0 CA A:THR308 4.4 17.8 1.0 CA A:ALA220 4.4 17.2 1.0 N A:HIS309 4.4 19.5 1.0 OG1 A:THR308 4.4 17.9 1.0 CA A:HIS309 4.5 19.1 1.0 O2 A:EDO527 4.5 43.1 1.0 N A:ILE221 4.6 14.3 1.0 O A:HOH838 4.6 23.9 1.0 CB A:HIS309 4.7 18.1 1.0 O A:ASN219 4.7 14.5 1.0 O A:HOH697 4.7 16.5 1.0 CG1 A:ILE221 4.7 13.9 1.0 C A:ALA220 5.0 17.1 1.0

Calcium binding site 3 out of 105 in the CA2+-Stabilized Adhesin Helps An Antarctic Bacterium Reach Out and Bind Ice


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of CA2+-Stabilized Adhesin Helps An Antarctic Bacterium Reach Out and Bind Ice within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca503 b:17.9 occ:1.00 O A:VAL226 2.2 14.6 1.0 OE1 A:GLU231 2.3 18.1 1.0 OD1 A:ASP224 2.4 16.6 1.0 OG1 A:THR222 2.4 15.7 1.0 O A:HOH699 2.5 16.7 1.0 O A:HOH698 2.5 27.7 1.0 OE2 A:GLU231 2.5 19.4 1.0 CD A:GLU231 2.8 18.4 1.0 CG A:ASP224 3.3 17.3 1.0 C A:VAL226 3.3 14.1 1.0 CB A:THR222 3.4 16.1 1.0 OD2 A:ASP224 3.5 17.4 1.0 CG2 A:THR222 4.0 16.0 1.0 N A:VAL226 4.1 14.2 1.0 CA A:VAL226 4.1 14.2 1.0 N A:ILE227 4.3 11.1 1.0 CG A:GLU231 4.3 18.8 1.0 CB A:VAL226 4.3 15.6 1.0 N A:ASN228 4.4 12.8 1.0 CA A:ILE227 4.5 11.4 1.0 O A:ILE221 4.5 16.0 1.0 N A:ASP224 4.5 17.4 1.0 CB A:ASP224 4.6 17.6 1.0 ND2 A:ASN228 4.6 15.1 1.0 CA A:THR222 4.6 16.3 1.0 C A:THR222 4.7 16.8 1.0 CG A:ASN228 4.8 14.4 1.0 O A:HOH928 4.8 33.2 1.0 C A:ILE227 4.8 12.1 1.0 OG A:SER223 4.9 23.6 1.0 N A:SER223 4.9 21.3 1.0 CA A:ASP224 5.0 16.9 1.0

Calcium binding site 4 out of 105 in the CA2+-Stabilized Adhesin Helps An Antarctic Bacterium Reach Out and Bind Ice


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of CA2+-Stabilized Adhesin Helps An Antarctic Bacterium Reach Out and Bind Ice within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca504 b:28.2 occ:1.00 O A:HOH615 2.2 16.2 1.0 OE2 A:GLU335 2.4 25.2 1.0 OE1 A:GLU335 2.4 25.7 1.0 OD1 A:ASP328 2.5 20.9 1.0 O A:HOH642 2.6 21.7 1.0 O A:VAL330 2.6 21.0 1.0 OG1 A:THR326 2.7 18.9 1.0 CD A:GLU335 2.8 25.4 1.0 CG A:ASP328 3.3 21.4 1.0 CB A:THR326 3.4 18.2 1.0 OD2 A:ASP328 3.5 22.7 1.0 C A:VAL330 3.7 21.5 1.0 CG2 A:THR326 4.0 18.7 1.0 ND2 A:ASN332 4.3 26.5 1.0 CG A:GLU335 4.3 25.9 1.0 N A:VAL330 4.5 19.7 1.0 CA A:VAL330 4.5 21.1 1.0 CG A:ASN332 4.6 27.4 1.0 N A:ASN332 4.6 26.4 1.0 N A:ASP328 4.6 18.9 1.0 N A:ILE331 4.6 25.9 1.0 CB A:ASP328 4.6 20.2 1.0 CA A:ILE331 4.7 26.2 1.0 CB A:VAL330 4.7 22.0 1.0 CA A:THR326 4.7 16.7 1.0 O A:HOH705 4.7 22.5 1.0 C A:THR326 4.9 16.3 1.0 O A:ILE325 4.9 18.1 1.0 N A:SER327 4.9 23.5 1.0 CB A:ASN332 4.9 27.8 1.0 OD1 A:ASN332 5.0 27.4 1.0

Calcium binding site 5 out of 105 in the CA2+-Stabilized Adhesin Helps An Antarctic Bacterium Reach Out and Bind Ice


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of CA2+-Stabilized Adhesin Helps An Antarctic Bacterium Reach Out and Bind Ice within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca505 b:29.2 occ:1.00 O A:ALA390 2.2 29.6 1.0 OD2 A:ASP388 2.3 30.1 1.0 OD1 A:ASP388 2.4 31.0 1.0 O A:HOH737 2.4 31.6 1.0 CG A:ASP388 2.7 30.8 1.0 O A:HOH975 2.8 41.7 1.0 C A:ALA390 3.5 29.1 1.0 CB A:ASP388 4.2 31.3 1.0 CB A:PHE391 4.3 23.6 1.0 CA A:PHE391 4.3 23.5 1.0 N A:PHE391 4.3 23.7 1.0 N A:ALA390 4.4 29.7 1.0 CA A:ALA390 4.4 29.6 1.0 O A:GLU360 4.6 29.3 1.0 CB A:ALA390 4.7 30.3 1.0 N A:ASN362 4.9 26.7 1.0

Calcium binding site 6 out of 105 in the CA2+-Stabilized Adhesin Helps An Antarctic Bacterium Reach Out and Bind Ice


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of CA2+-Stabilized Adhesin Helps An Antarctic Bacterium Reach Out and Bind Ice within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca506 b:18.4 occ:1.00 O1 A:EDO528 1.9 24.7 1.0 O A:THR412 2.3 22.6 1.0 O A:HOH785 2.4 29.8 1.0 O A:HOH710 2.4 12.6 1.0 OD2 A:ASP329 2.6 19.9 1.0 OD1 A:ASP329 2.6 19.1 1.0 O A:HOH740 2.7 15.8 1.0 CG A:ASP329 2.9 19.4 1.0 C1 A:EDO528 3.3 20.7 1.0 C A:THR412 3.5 23.3 1.0 C2 A:EDO528 4.0 19.6 1.0 N A:THR412 4.1 23.3 1.0 OG A:SER411 4.3 19.4 1.0 CB A:ASP329 4.4 19.3 1.0 N A:HIS413 4.4 23.0 1.0 CA A:HIS413 4.4 23.2 1.0 CA A:THR412 4.4 23.8 1.0 O A:HOH925 4.5 40.6 1.0 OG1 A:THR412 4.5 23.5 1.0 CA A:ALA324 4.5 18.9 1.0 O A:HOH806 4.5 22.4 1.0 CB A:HIS413 4.6 22.7 1.0 N A:ILE325 4.7 16.1 1.0 CG1 A:ILE325 4.8 17.5 1.0 O A:HOH832 4.8 39.0 1.0 O A:HOH994 4.9 42.9 1.0 O A:ASN323 4.9 16.7 1.0

Calcium binding site 7 out of 105 in the CA2+-Stabilized Adhesin Helps An Antarctic Bacterium Reach Out and Bind Ice


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of CA2+-Stabilized Adhesin Helps An Antarctic Bacterium Reach Out and Bind Ice within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca507 b:16.3 occ:1.00 O A:HOH603 2.0 17.4 1.0 O A:SER190 2.3 18.6 1.0 O A:HOH723 2.4 30.4 1.0 O A:HOH634 2.5 15.4 1.0 O A:HOH683 2.6 36.7 1.0 C A:SER190 3.4 19.0 1.0 OG A:SER190 4.0 20.6 1.0 N A:SER190 4.1 18.6 1.0 O A:ASP142 4.2 19.6 1.0 CA A:SER190 4.3 19.5 1.0 N A:ASP191 4.3 20.6 1.0 CA A:ASP191 4.4 21.0 1.0 CB A:ALA144 4.7 16.5 1.0 OD1 A:ASP147 4.7 20.8 1.0 CB A:SER190 4.8 20.0 1.0 C A:ASP191 4.8 20.9 1.0

Calcium binding site 8 out of 105 in the CA2+-Stabilized Adhesin Helps An Antarctic Bacterium Reach Out and Bind Ice


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of CA2+-Stabilized Adhesin Helps An Antarctic Bacterium Reach Out and Bind Ice within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca508 b:18.8 occ:1.00 O C:HOH790 2.3 18.5 1.0 OG1 C:THR265 2.4 19.3 1.0 O C:HOH719 2.4 15.8 1.0 OD2 A:ASP80 2.5 20.6 1.0 O C:HOH709 2.6 19.7 1.0 O C:HOH720 2.6 25.0 1.0 OD1 A:ASP80 2.7 19.8 1.0 O C:HOH783 2.8 13.9 1.0 CG A:ASP80 2.9 20.4 1.0 CB C:THR265 3.6 18.9 1.0 O A:HOH786 4.2 8.7 0.5 CG2 C:THR265 4.4 19.1 1.0 OE2 C:GLU249 4.4 19.7 1.0 CB A:ASP80 4.5 18.1 1.0 CG2 A:THR96 4.5 15.4 1.0 O C:HOH1083 4.5 29.1 1.0 O C:THR265 4.5 17.9 1.0 O A:HOH850 4.6 24.1 1.0 O C:VAL266 4.7 14.4 1.0 C C:THR265 4.7 17.7 1.0 CA C:THR265 4.7 17.8 1.0 O A:HOH818 4.7 19.9 1.0 O A:HOH868 4.9 22.5 1.0 CB A:SER98 4.9 20.9 1.0

Calcium binding site 9 out of 105 in the CA2+-Stabilized Adhesin Helps An Antarctic Bacterium Reach Out and Bind Ice


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of CA2+-Stabilized Adhesin Helps An Antarctic Bacterium Reach Out and Bind Ice within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca509 b:17.3 occ:1.00 O D:HOH707 2.3 21.4 1.0 O A:SER398 2.3 21.4 1.0 O A:HOH706 2.4 12.1 1.0 O A:HOH732 2.4 35.8 1.0 O A:HOH731 2.5 49.2 1.0 O A:HOH733 2.5 29.2 1.0 C A:SER398 3.4 21.6 1.0 OG A:SER398 4.1 23.4 1.0 N A:SER398 4.1 20.5 1.0 O A:ASP350 4.2 19.6 1.0 CA A:SER398 4.2 21.4 1.0 N A:ASP399 4.3 21.4 1.0 CA A:ASP399 4.4 21.7 1.0 CB A:ALA352 4.6 20.5 1.0 OG1 D:THR7 4.6 22.4 1.0 OD1 A:ASP355 4.7 20.5 1.0 CB A:SER398 4.8 22.4 1.0 C A:ASP399 4.9 22.2 1.0

Calcium binding site 10 out of 105 in the CA2+-Stabilized Adhesin Helps An Antarctic Bacterium Reach Out and Bind Ice


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of CA2+-Stabilized Adhesin Helps An Antarctic Bacterium Reach Out and Bind Ice within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca510 b:38.3 occ:1.00 O A:HOH919 2.1 33.6 1.0 O A:HOH747 2.4 33.6 1.0 O A:HOH942 2.5 37.5 1.0 O A:SER86 2.6 25.7 1.0 O A:HOH725 2.6 20.9 1.0 OG A:SER86 2.7 27.8 1.0 O A:HOH748 3.6 31.9 1.0 C A:SER86 3.6 26.1 1.0 CB A:SER86 3.9 27.7 1.0 N A:SER86 4.0 26.3 1.0 CA A:SER86 4.1 27.5 1.0 O A:ASP38 4.4 19.0 1.0 CB A:ALA40 4.4 15.5 1.0 O A:HOH913 4.5 28.4 1.0 OD1 A:ASP43 4.6 18.7 1.0 N A:ASP87 4.7 22.2 1.0 O A:HOH869 4.8 37.5 1.0 O A:ASP87 4.9 21.6 1.0 CA A:ASP87 4.9 20.4 1.0 C A:ASP87 5.0 20.1 1.0

T.D.Vance, L.L.Olijve, R.L.Campbell, I.K.Voets, P.L.Davies, S.Guo. CA2+-Stabilized Adhesin Helps An Antarctic Bacterium Reach Out and Bind Ice. Biosci.Rep. V. 34 2014.
ISSN: ISSN 0144-8463
PubMed: 24892750
DOI: 10.1042/BSR20140083