Calcium in PDB 4p9x: Structure of Cona/RH3GLU Complex

The structure of Structure of Cona/RH3GLU Complex, PDB code: 4p9x was solved by F.Sakai, M.S.Weiss, G.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.06
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	84.173, 116.028, 84.255, 90.00, 95.98, 90.00
R / Rfree (%)	24.5 / 29.5

The structure of Structure of Cona/RH3GLU Complex also contains other interesting chemical elements:

Manganese

(Mn)

4 atoms

The binding sites of Calcium atom in the Structure of Cona/RH3GLU Complex (pdb code 4p9x). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Structure of Cona/RH3GLU Complex, PDB code: 4p9x:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Structure of Cona/RH3GLU Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Cona/RH3GLU Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca303 b:27.0 occ:1.00 O A:TYR12 2.3 25.3 1.0 O A:HOH406 2.3 26.8 1.0 OD1 A:ASN14 2.3 24.9 1.0 OD1 A:ASP10 2.4 27.1 1.0 OD2 A:ASP10 2.4 25.8 1.0 OD2 A:ASP19 2.4 30.8 1.0 O A:HOH405 2.6 18.8 1.0 CG A:ASP10 2.8 28.8 1.0 C A:TYR12 3.5 26.5 1.0 CG A:ASN14 3.5 27.0 1.0 CG A:ASP19 3.5 31.9 1.0 OD1 A:ASP19 3.9 32.2 1.0 N A:ASN14 4.0 31.5 1.0 CB A:ASN14 4.1 28.5 1.0 MN A:MN302 4.2 30.6 1.0 CB A:ASP10 4.3 26.4 1.0 O A:HOH404 4.4 25.4 1.0 CA A:TYR12 4.4 25.9 1.0 N A:PRO13 4.4 26.6 1.0 N A:TYR12 4.5 24.0 1.0 CB A:TYR12 4.5 24.7 1.0 CA A:PRO13 4.5 29.1 1.0 C A:PRO13 4.6 32.5 1.0 ND2 A:ASN14 4.6 26.7 1.0 O A:ASP208 4.6 28.0 1.0 CE1 A:HIS24 4.7 34.5 1.0 OD1 A:ASP208 4.7 26.1 1.0 CB A:ASP19 4.7 32.7 1.0 CA A:ASN14 4.7 31.0 1.0 O A:ARG228 4.8 28.1 1.0 CD1 A:TYR12 4.8 27.9 1.0 CB A:ARG228 4.8 26.8 1.0 CA A:ARG228 4.8 26.1 1.0

Calcium binding site 2 out of 4 in the Structure of Cona/RH3GLU Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Cona/RH3GLU Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca303 b:33.9 occ:1.00 O B:HOH407 2.2 35.5 1.0 O B:HOH406 2.3 32.5 1.0 OD1 B:ASP10 2.3 34.4 1.0 OD1 B:ASN14 2.4 36.2 1.0 O B:TYR12 2.4 27.7 1.0 OD2 B:ASP19 2.4 27.9 1.0 OD2 B:ASP10 2.6 35.5 1.0 CG B:ASP10 2.8 32.7 1.0 C B:TYR12 3.5 27.8 1.0 CG B:ASP19 3.6 28.3 1.0 CG B:ASN14 3.6 38.0 1.0 N B:ASN14 4.0 32.7 1.0 OD1 B:ASP19 4.1 28.0 1.0 MN B:MN302 4.2 35.4 1.0 CB B:ASP10 4.3 29.8 1.0 CA B:TYR12 4.3 28.6 1.0 N B:TYR12 4.3 30.2 1.0 CB B:ASN14 4.4 37.2 1.0 N B:PRO13 4.5 31.4 1.0 CA B:PRO13 4.5 30.0 1.0 CB B:TYR12 4.5 27.2 1.0 O B:HOH405 4.5 27.5 1.0 C B:PRO13 4.6 31.5 1.0 O B:ASP208 4.6 27.7 1.0 CE1 B:HIS24 4.6 27.5 1.0 ND2 B:ASN14 4.6 35.8 1.0 CA B:ARG228 4.7 33.5 1.0 CB B:ASP19 4.8 30.3 1.0 OD1 B:ASP208 4.8 27.6 1.0 O B:ARG228 4.8 31.8 1.0 CA B:ASN14 4.8 36.2 1.0 CB B:ARG228 4.8 37.0 1.0

Calcium binding site 3 out of 4 in the Structure of Cona/RH3GLU Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of Cona/RH3GLU Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca303 b:28.0 occ:1.00 O C:HOH408 2.2 22.9 1.0 OD2 C:ASP19 2.3 26.0 1.0 OD1 C:ASN14 2.3 26.8 1.0 OD2 C:ASP10 2.4 27.8 1.0 O C:HOH407 2.4 22.4 1.0 O C:TYR12 2.4 25.3 1.0 OD1 C:ASP10 2.5 27.9 1.0 CG C:ASP10 2.8 27.7 1.0 CG C:ASP19 3.4 27.4 1.0 CG C:ASN14 3.5 26.8 1.0 C C:TYR12 3.6 26.6 1.0 OD1 C:ASP19 4.0 23.6 1.0 N C:ASN14 4.0 32.3 1.0 MN C:MN302 4.1 29.1 1.0 CB C:ASN14 4.2 29.4 1.0 CB C:ASP10 4.3 24.2 1.0 CA C:TYR12 4.4 26.3 1.0 N C:TYR12 4.5 25.0 1.0 ND2 C:ASN14 4.5 23.3 1.0 N C:PRO13 4.6 27.1 1.0 CA C:PRO13 4.6 29.6 1.0 CB C:TYR12 4.6 25.4 1.0 C C:PRO13 4.6 31.9 1.0 O C:HOH406 4.6 31.0 1.0 CE1 C:HIS24 4.7 23.2 1.0 O C:ARG228 4.7 30.3 1.0 CB C:ASP19 4.7 27.7 1.0 OD1 C:ASP208 4.7 25.7 1.0 CA C:ARG228 4.7 28.4 1.0 O C:ASP208 4.8 24.5 1.0 CB C:ARG228 4.8 26.1 1.0 CA C:ASN14 4.8 30.8 1.0 CD1 C:TYR12 4.8 26.5 1.0

Calcium binding site 4 out of 4 in the Structure of Cona/RH3GLU Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of Cona/RH3GLU Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca303 b:30.6 occ:1.00 OD1 D:ASN14 2.2 31.0 1.0 OD2 D:ASP19 2.4 29.1 1.0 O D:HOH403 2.4 33.2 1.0 OD2 D:ASP10 2.5 31.5 1.0 O D:TYR12 2.5 28.6 1.0 O D:HOH402 2.5 27.0 1.0 OD1 D:ASP10 2.6 35.1 1.0 CG D:ASP10 2.9 34.2 1.0 CG D:ASN14 3.4 32.8 1.0 CG D:ASP19 3.5 33.7 1.0 C D:TYR12 3.6 27.8 1.0 N D:ASN14 4.0 32.1 1.0 CB D:ASN14 4.0 30.7 1.0 OD1 D:ASP19 4.1 34.6 1.0 MN D:MN302 4.2 34.6 1.0 CB D:ASP10 4.4 29.7 1.0 CA D:TYR12 4.4 28.8 1.0 O D:HOH401 4.4 22.5 1.0 CB D:ARG228 4.4 29.7 1.0 N D:TYR12 4.5 28.6 1.0 CB D:TYR12 4.5 28.2 1.0 ND2 D:ASN14 4.5 30.6 1.0 O D:ASP208 4.6 24.3 1.0 CA D:ASN14 4.6 32.7 1.0 CA D:ARG228 4.6 30.1 1.0 N D:PRO13 4.7 30.0 1.0 OD1 D:ASP208 4.7 25.4 1.0 CE1 D:HIS24 4.7 28.3 1.0 C D:PRO13 4.7 33.9 1.0 CB D:ASP19 4.7 32.7 1.0 O D:ARG228 4.8 30.2 1.0 CA D:PRO13 4.8 31.8 1.0 CD1 D:TYR12 4.9 31.5 1.0

F.Sakai, F.S.Weiss, G.Chen. Structure of Cona/RH3GLU Complex To Be Published.