Calcium in PDB 4p9y: Structure of Cona/RH4MAN

The structure of Structure of Cona/RH4MAN, PDB code: 4p9y was solved by F.Sakai, M.S.Weiss, G.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.89
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	61.600, 116.110, 58.690, 90.00, 90.00, 90.00
R / Rfree (%)	20.1 / 25.8

The structure of Structure of Cona/RH4MAN also contains other interesting chemical elements:

Manganese

(Mn)

2 atoms

The binding sites of Calcium atom in the Structure of Cona/RH4MAN (pdb code 4p9y). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structure of Cona/RH4MAN, PDB code: 4p9y:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Structure of Cona/RH4MAN


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Cona/RH4MAN within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca303 b:22.8 occ:1.00 O A:HOH425 2.3 18.4 1.0 OD2 A:ASP19 2.3 25.9 1.0 OD1 A:ASN14 2.4 21.4 1.0 O A:TYR12 2.4 24.0 1.0 OD1 A:ASP10 2.4 19.8 1.0 O A:HOH424 2.5 21.5 1.0 OD2 A:ASP10 2.5 20.3 1.0 CG A:ASP10 2.8 19.8 1.0 CG A:ASP19 3.5 25.7 1.0 CG A:ASN14 3.5 23.1 1.0 C A:TYR12 3.6 24.8 1.0 OD1 A:ASP19 3.9 24.1 1.0 N A:ASN14 3.9 26.4 1.0 CB A:ASN14 4.1 25.1 1.0 MN A:MN302 4.2 26.4 1.0 CB A:ASP10 4.4 20.1 1.0 CA A:TYR12 4.4 24.2 1.0 N A:TYR12 4.4 24.0 1.0 CB A:TYR12 4.5 23.0 1.0 O A:ASP208 4.5 19.8 1.0 O A:HOH423 4.6 25.5 1.0 N A:PRO13 4.6 27.6 1.0 OD1 A:ASP208 4.6 20.5 1.0 C A:PRO13 4.6 27.9 1.0 CA A:PRO13 4.6 28.8 1.0 ND2 A:ASN14 4.6 23.2 1.0 CB A:ARG228 4.6 22.6 1.0 CE1 A:HIS24 4.7 25.9 1.0 CA A:ASN14 4.7 27.0 1.0 CB A:ASP19 4.7 28.2 1.0 CA A:ARG228 4.7 21.6 1.0 CD1 A:TYR12 4.8 23.6 1.0 NE2 A:HIS24 4.9 25.4 1.0 O A:ARG228 4.9 21.6 1.0

Calcium binding site 2 out of 2 in the Structure of Cona/RH4MAN


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Cona/RH4MAN within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca303 b:35.5 occ:1.00 O B:HOH412 2.3 26.9 1.0 OD1 B:ASN14 2.3 35.8 1.0 O B:TYR12 2.4 36.2 1.0 OD2 B:ASP19 2.4 37.8 1.0 O B:HOH411 2.5 29.6 1.0 OD1 B:ASP10 2.5 27.4 1.0 OD2 B:ASP10 2.6 29.6 1.0 CG B:ASP10 2.9 28.7 1.0 CG B:ASN14 3.5 36.6 1.0 C B:TYR12 3.6 35.7 1.0 CG B:ASP19 3.6 39.0 1.0 N B:ASN14 3.9 37.8 1.0 CB B:ASN14 4.0 37.5 1.0 OD1 B:ASP19 4.1 38.5 1.0 MN B:MN302 4.2 33.5 1.0 CA B:TYR12 4.4 35.3 1.0 CB B:ASP10 4.4 29.7 1.0 N B:TYR12 4.5 33.2 1.0 CB B:TYR12 4.5 35.3 1.0 N B:PRO13 4.6 37.0 1.0 O B:HOH410 4.6 29.7 1.0 ND2 B:ASN14 4.6 36.9 1.0 CA B:ASN14 4.6 39.4 1.0 CE1 B:HIS24 4.6 32.2 1.0 C B:PRO13 4.6 39.1 1.0 O B:ASP208 4.6 30.5 1.0 OD1 B:ASP208 4.7 32.0 1.0 CA B:PRO13 4.7 37.6 1.0 O B:ARG228 4.7 31.9 1.0 CB B:ASP19 4.8 39.4 1.0 CB B:ARG228 4.9 33.2 1.0 CA B:ARG228 4.9 32.8 1.0 CD2 B:TYR12 5.0 37.3 1.0 NE2 B:HIS24 5.0 31.0 1.0

F.Sakai, M.S.Weiss, G.Chen. Structure of Cona/RH4MAN To Be Published.