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Calcium in PDB 4pc0: Structure of the Human RBAP48-MTA1(670-711) Complex

Protein crystallography data

The structure of Structure of the Human RBAP48-MTA1(670-711) Complex, PDB code: 4pc0 was solved by S.S.M.Alqarni, A.P.G.Silva, J.P.Mackay, E.D.Laue, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 52.250, 123.230, 87.340, 90.00, 103.39, 90.00
R / Rfree (%) 20.4 / 25.9

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of the Human RBAP48-MTA1(670-711) Complex (pdb code 4pc0). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structure of the Human RBAP48-MTA1(670-711) Complex, PDB code: 4pc0:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 4pc0

Go back to Calcium Binding Sites List in 4pc0
Calcium binding site 1 out of 2 in the Structure of the Human RBAP48-MTA1(670-711) Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of the Human RBAP48-MTA1(670-711) Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca502

b:42.4
occ:1.00
OE1 A:GLU330 2.3 34.7 1.0
O A:HOH622 2.4 28.2 1.0
O A:HOH614 2.6 39.2 1.0
CD A:GLU330 3.0 34.9 1.0
OE2 A:GLU330 3.0 36.8 1.0
CG A:GLU330 4.3 32.7 1.0
CB A:TYR284 4.7 29.2 1.0
CB A:GLU330 4.9 30.5 1.0
OG A:SER285 4.9 36.1 1.0

Calcium binding site 2 out of 2 in 4pc0

Go back to Calcium Binding Sites List in 4pc0
Calcium binding site 2 out of 2 in the Structure of the Human RBAP48-MTA1(670-711) Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of the Human RBAP48-MTA1(670-711) Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca501

b:45.8
occ:1.00
OE1 B:GLU330 2.4 36.8 1.0
O B:HOH611 2.4 30.6 1.0
CD B:GLU330 3.0 35.9 1.0
OE2 B:GLU330 3.1 35.4 1.0
O B:HOH717 4.2 30.3 1.0
CG B:GLU330 4.4 32.6 1.0
O B:HOH757 4.7 29.2 1.0
CB B:TYR284 4.8 26.1 1.0
CB B:GLU330 4.9 30.6 1.0

Reference:

S.S.Alqarni, A.Murthy, W.Zhang, M.R.Przewloka, A.P.Silva, A.A.Watson, S.Lejon, X.Y.Pei, A.H.Smits, S.L.Kloet, H.Wang, N.E.Shepherd, P.H.Stokes, G.A.Blobel, M.Vermeulen, D.M.Glover, J.P.Mackay, E.D.Laue. Insight Into the Architecture of the Nurd Complex: Structure of the RBAP48-MTA1 Sub-Complex. J.Biol.Chem. V. 289 21844 2014.
ISSN: ISSN 0021-9258
PubMed: 24920672
DOI: 10.1074/JBC.M114.558940
Page generated: Sat Dec 12 05:03:52 2020

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