Calcium in PDB 4pmb: Crystal Structure of Staphylcoccal Nuclease Variant Delta+Phs I92S at Cryogenic Temperature

Enzymatic activity of Crystal Structure of Staphylcoccal Nuclease Variant Delta+Phs I92S at Cryogenic Temperature

All present enzymatic activity of Crystal Structure of Staphylcoccal Nuclease Variant Delta+Phs I92S at Cryogenic Temperature:
3.1.31.1;

Protein crystallography data

The structure of Crystal Structure of Staphylcoccal Nuclease Variant Delta+Phs I92S at Cryogenic Temperature, PDB code: 4pmb was solved by J.L.Sorenson, J.L.Schlessman, E.B.Garcia-Moreno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	37.94 / 1.80
*Space group*	P 1 2₁ 1
*Cell size a, b, c (Å), α, β, γ (°)*	31.031, 59.964, 38.017, 90.00, 93.63, 90.00
*R / R_free (%)*	19.6 / 22.7

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Staphylcoccal Nuclease Variant Delta+Phs I92S at Cryogenic Temperature (pdb code 4pmb). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Staphylcoccal Nuclease Variant Delta+Phs I92S at Cryogenic Temperature, PDB code: 4pmb:

Calcium binding site 1 out of 1 in 4pmb

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Calcium Binding Sites List in 4pmb

Calcium binding site 1 out of 1 in the Crystal Structure of Staphylcoccal Nuclease Variant Delta+Phs I92S at Cryogenic Temperature

Mono view

Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Staphylcoccal Nuclease Variant Delta+Phs I92S at Cryogenic Temperature within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Ca202 b:19.7 occ:1.00	O	A:HOH327	2.8	15.0	1.0
	OD2	A:ASP21	2.8	14.6	1.0
	OD1	A:ASP40	2.8	16.0	1.0
	O	A:HOH335	2.8	19.8	1.0
	O	A:THR41	2.8	15.3	1.0
	OE2	A:GLU43	2.9	37.4	1.0
	O5P	A:THP201	3.1	16.1	1.0
	O	A:HOH345	3.5	23.8	1.0
	CG	A:ASP21	3.6	14.1	1.0
	OD1	A:ASP21	3.7	14.1	1.0
	C	A:THR41	3.9	15.6	1.0
	CG	A:ASP40	3.9	16.4	1.0
	O	A:HOH305	3.9	20.1	1.0
	CD	A:GLU43	4.0	35.8	1.0
	N	A:THR41	4.0	13.8	1.0
	NH2	A:ARG35	4.0	12.2	1.0
	P2	A:THP201	4.1	17.0	1.0
	OG1	A:THR41	4.1	13.5	1.0
	O	A:HOH319	4.2	24.5	1.0
	O4P	A:THP201	4.2	15.2	1.0
	CA	A:THR41	4.4	14.4	1.0
	O6P	A:THP201	4.6	15.4	1.0
	OD2	A:ASP40	4.6	18.4	1.0
	OE1	A:GLU43	4.6	33.6	1.0
	O	A:HOH303	4.6	22.6	1.0
	CZ	A:ARG35	4.6	11.7	1.0
	CA	A:ASP40	4.7	13.3	1.0
	C	A:ASP40	4.7	13.5	1.0
	NE	A:ARG35	4.8	11.1	1.0
	C	A:PRO42	4.9	20.6	1.0
	O	A:PRO42	4.9	20.0	1.0
	CB	A:THR41	4.9	14.3	1.0
	CB	A:ASP40	4.9	14.2	1.0
	CG	A:GLU43	4.9	32.4	1.0
	N	A:GLU43	5.0	24.2	1.0

Reference:

J.L.Sorenson, J.L.Schlessman, E.B.Garcia-Moreno. Crystal Structure of Staphylcoccal Nuclease Variant Delta+Phs I92S at Cryogenic Temperature To Be Published.

Page generated: Sun Jul 14 12:08:22 2024

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