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Calcium in PDB 4q51: Crystal Structure of A Putative Molybdenum Cofactor Biosynthesis Protein F From Burkholderia Cenocepacia J2315

Protein crystallography data

The structure of Crystal Structure of A Putative Molybdenum Cofactor Biosynthesis Protein F From Burkholderia Cenocepacia J2315, PDB code: 4q51 was solved by E.V.Filippova, Z.Wawrzak, O.Kiryukhina, G.Minasov, R.Jedrzejczak, A.Joachimiak, W.F.Anderson, Midwest Center For Structural Genomics(Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.57 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 69.402, 46.163, 77.293, 90.00, 99.14, 90.00
R / Rfree (%) 16 / 20.9

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of A Putative Molybdenum Cofactor Biosynthesis Protein F From Burkholderia Cenocepacia J2315 (pdb code 4q51). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of A Putative Molybdenum Cofactor Biosynthesis Protein F From Burkholderia Cenocepacia J2315, PDB code: 4q51:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 4q51

Go back to Calcium Binding Sites List in 4q51
Calcium binding site 1 out of 2 in the Crystal Structure of A Putative Molybdenum Cofactor Biosynthesis Protein F From Burkholderia Cenocepacia J2315


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Putative Molybdenum Cofactor Biosynthesis Protein F From Burkholderia Cenocepacia J2315 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca401

b:30.0
occ:1.00
O A:HOH659 1.8 28.0 1.0
O A:HOH538 2.2 37.4 1.0
O A:HOH603 2.3 30.9 1.0
OE2 A:GLU256 2.4 23.2 1.0
O A:HOH535 2.4 23.6 1.0
OE1 A:GLU256 2.5 21.9 1.0
CD A:GLU256 2.8 20.5 1.0
OE1 A:GLU231 3.9 33.7 1.0
OE2 A:GLU231 3.9 38.9 1.0
CG A:GLU256 4.3 17.3 1.0
O A:HOH664 4.3 27.7 1.0
CD A:GLU231 4.4 35.2 1.0
OG1 A:THR261 4.4 17.3 1.0
O A:HOH579 4.4 27.2 1.0
CZ2 A:TRP224 4.4 16.2 1.0
CD2 A:LEU51 4.4 24.7 1.0
CG2 A:THR261 4.5 17.1 1.0
O A:HOH526 4.6 17.1 1.0
CH2 A:TRP224 4.6 16.3 1.0
O A:HOH654 4.6 36.8 1.0
CB A:THR261 4.7 15.5 1.0
CE2 A:TRP224 4.8 15.5 1.0
NE1 A:TRP254 4.9 16.6 1.0

Calcium binding site 2 out of 2 in 4q51

Go back to Calcium Binding Sites List in 4q51
Calcium binding site 2 out of 2 in the Crystal Structure of A Putative Molybdenum Cofactor Biosynthesis Protein F From Burkholderia Cenocepacia J2315


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Putative Molybdenum Cofactor Biosynthesis Protein F From Burkholderia Cenocepacia J2315 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca401

b:25.4
occ:1.00
O B:HOH743 1.9 29.9 1.0
O B:HOH744 2.4 37.3 1.0
O B:HOH740 2.4 31.0 1.0
OE2 B:GLU256 2.4 19.3 1.0
O B:HOH741 2.4 31.3 1.0
O B:HOH742 2.4 18.9 1.0
OE1 B:GLU256 2.5 17.5 1.0
CD B:GLU256 2.8 17.0 1.0
O B:HOH753 4.2 25.6 1.0
OE1 B:GLU231 4.3 32.4 1.0
CG B:GLU256 4.3 16.8 1.0
OE2 B:GLU231 4.3 34.4 1.0
CZ2 B:TRP224 4.4 17.5 1.0
CG2 B:THR261 4.5 20.2 1.0
O B:HOH556 4.5 29.3 1.0
OG1 B:THR261 4.6 20.1 1.0
O B:HOH534 4.6 17.1 1.0
CH2 B:TRP224 4.6 17.0 1.0
O B:HOH689 4.7 33.5 1.0
CD2 B:LEU51 4.7 22.9 1.0
CD B:GLU231 4.7 30.0 1.0
CE2 B:TRP224 4.8 16.5 1.0
CB B:THR261 4.8 17.4 1.0
NE1 B:TRP254 4.9 14.7 1.0

Reference:

E.V.Filippova, Z.Wawrzak, O.Kiryukhina, G.Minasov, R.Jedrzejczak, A.Joachimiak, W.F.Anderson. Crystal Structure of A Putative Molybdenum Cofactor Biosynthesis Protein F From Burkholderia Cenocepacia J2315 To Be Published.
Page generated: Sun Jul 14 12:19:06 2024

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